Fish Transcriptome and Expression Database

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economic fish

trnaf-gaa-211

Basic Information

Item	Value
gene id	trnaf-gaa-211
gene name	NA
gene type	coding
species	rainbow trout (Oncorhynchus mykiss)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	NW_023493666.1
NCBI id	JAAXML020000359.1
chromosome length	1258143
location	1123071 ~ 1123143 (-)
genome version	USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnaf-gaa-211
GCcaaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccgggtttcggca

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
trnaf-gaa-211	True	73	mRNA	0.52	1	1123071	1123143

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
trnaf-gaa-210	NA	coding	downstream	1024	1121975 ~ 1122047 (-)
trnaf-gaa-209	NA	coding	downstream	2781	1120218 ~ 1120290 (-)
trnaf-gaa-208	NA	coding	downstream	3890	1119109 ~ 1119181 (-)
trnaf-gaa-207	NA	coding	downstream	4997	1118002 ~ 1118074 (-)
trnai-aau-208	NA	coding	downstream	6897	1116101 ~ 1116174 (-)
LOC118947138	LOC106586259	coding	upstream	13008	1136151 ~ 1137529 (-)
G2341032	NA	non-coding	downstream	2313	1117761 ~ 1120758 (-)
G2341021	NA	non-coding	downstream	7438	1058805 ~ 1115633 (-)
G2341020	NA	non-coding	downstream	48871	1068581 ~ 1074200 (-)
G2341025	NA	non-coding	downstream	58792	1059857 ~ 1064279 (-)
G2341006	NA	non-coding	downstream	82675	1005923 ~ 1040396 (-)
G2341059	NA	non-coding	upstream	61124	1184267 ~ 1184799 (-)
G2341069	NA	non-coding	upstream	105670	1228813 ~ 1229240 (-)
G2340951	NA	other	downstream	193939	878809 ~ 929132 (-)
G2340905	NA	other	downstream	308416	806890 ~ 814655 (-)
LOC110514508	LOC106595224	other	downstream	1006355	114200 ~ 116716 (-)
G2340407	NA	other	downstream	1059933	62414 ~ 63138 (-)
G2341053	NA	other	upstream	35455	1158598 ~ 1164054 (-)

Expression

Co-expression Network

Homologous

species	gene id	symbol	gene type	chromosome	NCBI id	location
eurasian perch (Perca fluviatilis)	trnaf-gaa_60	NA	coding	NC_053121.1	CM020918.1	6600220 ~ 6600292 (+)
tiger barb (Puntius tetrazona)	trnas-uga_19	NA	coding	NC_056702.1	CM032071.1	25891475 ~ 25891556 (+)