trnaf-gaa_60


Basic Information

Item Value
gene id trnaf-gaa_60
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 6600220 ~ 6600292 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_446
gccaaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccgggtttcggca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_446 True 73 tRNA 0.52 1 6600220 6600292

Neighbor

gene id symbol gene type direction distance location
trnaf-gaa_59 NA coding upstream 1150 6598998 ~ 6599070 (+)
trnaf-gaa_58 NA coding upstream 2711 6597437 ~ 6597509 (+)
trnaf-gaa_57 NA coding upstream 5530 6594618 ~ 6594690 (+)
trnaf-gaa_56 NA coding upstream 6228 6593920 ~ 6593992 (+)
trnaf-gaa_55 NA coding upstream 6751 6593397 ~ 6593469 (+)
trnad-guc_3 NA coding downstream 2358 6602650 ~ 6602811 (+)
trnaf-gaa_61 NA coding downstream 5402 6605694 ~ 6605766 (+)
trnaf-gaa_62 NA coding downstream 7842 6608134 ~ 6608206 (+)
trnaf-gaa_63 NA coding downstream 8361 6608653 ~ 6608725 (+)
trnad-guc_4 NA coding downstream 9745 6610037 ~ 6610204 (+)
LOC120566291 NA non-coding upstream 45391 6554161 ~ 6554829 (+)
trnaf-gaa_29 NA non-coding upstream 52636 6547510 ~ 6547584 (+)
trnaf-gaa_28 NA non-coding upstream 53854 6546294 ~ 6546366 (+)
trnaf-gaa_27 NA non-coding upstream 54465 6545683 ~ 6545755 (+)
trnaf-gaa_26 NA non-coding upstream 54984 6545164 ~ 6545236 (+)
G103744 NA non-coding downstream 54680 6654972 ~ 6655228 (+)
G103752 NA non-coding downstream 113661 6713953 ~ 6714209 (+)
G103753 NA non-coding downstream 120958 6721250 ~ 6721597 (+)
G103788 NA non-coding downstream 514989 7115281 ~ 7115562 (+)
G103796 NA non-coding downstream 629183 7229475 ~ 7229888 (+)
irf2 irf2 other upstream 409656 6177996 ~ 6190564 (+)
G103305 NA other upstream 2530606 4068811 ~ 4069614 (+)
smad5 LOC103363483,LOC104920560,LOC103391130,LOC101064562 other upstream 2727387 3860635 ~ 3872833 (+)
G103034 NA other upstream 3084503 3514023 ~ 3515717 (+)
zgc:110843 cisd1 other upstream 3348589 3247545 ~ 3251631 (+)
trnam-cau_9 NA other downstream 255890 6856182 ~ 6856254 (+)
G103836 NA other downstream 1021346 7621638 ~ 7643183 (+)
LOC120567362 NA other downstream 1739124 8339416 ~ 8346534 (+)
LOC120567404 LOC104951845 other downstream 1874324 8474616 ~ 8476449 (+)
G104301 NA other downstream 3317580 9917872 ~ 9918315 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnaf-gaa-211 NA coding NW_023493666.1 JAAXML020000359.1 1123071 ~ 1123143 (-)