XLOC_004424 (rcvrnb)


Basic Information

Item Value
gene id XLOC_004424
gene name rcvrnb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 316238 ~ 319392 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008887
ATGGGAAACTCCAGGAGCAGCGCGCTCTCCAGAGACGTCCTCCAGGAGCTGCAGACCAGCACCACATACAGCCAGGAGCAGCTCTTCTCCTGGTACCAGAAGTTCCTGAACGAGTGTCCGACGGGCCGCATCAGCAGAGAGCAGTTCCAGAGCATCTACGCCAGCTTCTTCCCAGACGCAGACCCCGGGGCATACGCCCAGCACGTCTTCAGGAGCTTCGACGCAGACAGTGACGGCACGCTGGACTTCAAGGAGTACATAGTGGCGCTGCACCTCACTTCCTCCGGCAAGACTGTGGAAAAGCTGGAGTGGGCCTTCGCACTCTATGATGTGGACCGGAACGGCAGCATCACCAAAAACGAGATCCACGAGATCGTCAAgTCAATATTCAACATGATCTCCAAAGAAGACCAGAAAAACCTTCCTGACGACGAGAACACGCCAGAAAAACGAACTGACAAAATATGGGACTTTTTTGGGAAAAAAGAAAATGGTAAAATAACGGAGGGCGAGTTCATTCAGGGAGTGATGGACAACAAACACATCCTCCGTCTCATTCAGTTCGACAAACCACAGAAAGTGCAAGAAAAACTCAAAGAGAAGACACAGTGA

Function

symbol description
rcvrnb Predicted to enable calcium ion binding activity. Is expressed in epiphysis and retinal outer nuclear layer. Orthologous to human RCVRN (recoverin).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120815-1 Predicted to enable calcium ion binding activity. Is expressed in epiphysis and retinal outer nuclear layer. Orthologous to human RCVRN (recoverin).

Ensembl:

ensembl_id ENSDARG00000111827

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008887 True 612 mRNA 0.52 3 316238 319392

Neighbor

gene id symbol gene type direction distance location
XLOC_004422 NA coding upstream 27677 287433 ~ 288561 (+)
XLOC_004421 NA coding upstream 34973 280141 ~ 281265 (+)
XLOC_004420 CABZ01102038.1 coding upstream 113598 197424 ~ 202640 (+)
XLOC_004419 NA coding upstream 248458 65644 ~ 67780 (+)
XLOC_004418 mrpl58 coding upstream 266318 47439 ~ 49920 (+)
XLOC_004425 gsg1l2b coding downstream 68458 387850 ~ 408076 (+)
XLOC_004426 CT737227.1 coding downstream 90646 410038 ~ 459295 (+)
XLOC_004427 mprip coding downstream 146309 465701 ~ 528026 (+)
XLOC_004428 si:dkey-94l16.4 coding downstream 212627 532019 ~ 540211 (+)
XLOC_004429 NA coding downstream 223317 542709 ~ 543010 (+)
XLOC_004433 NA non-coding downstream 572786 892178 ~ 895643 (+)
XLOC_004434 NA non-coding downstream 583196 902588 ~ 903652 (+)
XLOC_004436 NA non-coding downstream 755011 1074403 ~ 1078180 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_06331623_06334915 RCVRN, RCVRNB coding CI01000047 null 6331354 ~ 6334956 (+)