RNA id: TCONS_00008887


Basic Information

Item Value
RNA id TCONS_00008887
length 612
RNA type mRNA
GC content 0.52
exon number 3
gene id XLOC_004424
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 316238 ~ 319392 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGAAACTCCAGGAGCAGCGCGCTCTCCAGAGACGTCCTCCAGGAGCTGCAGACCAGCACCACATACAGCCAGGAGCAGCTCTTCTCCTGGTACCAGAAGTTCCTGAACGAGTGTCCGACGGGCCGCATCAGCAGAGAGCAGTTCCAGAGCATCTACGCCAGCTTCTTCCCAGACGCAGACCCCGGGGCATACGCCCAGCACGTCTTCAGGAGCTTCGACGCAGACAGTGACGGCACGCTGGACTTCAAGGAGTACATAGTGGCGCTGCACCTCACTTCCTCCGGCAAGACTGTGGAAAAGCTGGAGTGGGCCTTCGCACTCTATGATGTGGACCGGAACGGCAGCATCACCAAAAACGAGATCCACGAGATCGTCAAgTCAATATTCAACATGATCTCCAAAGAAGACCAGAAAAACCTTCCTGACGACGAGAACACGCCAGAAAAACGAACTGACAAAATATGGGACTTTTTTGGGAAAAAAGAAAATGGTAAAATAACGGAGGGCGAGTTCATTCAGGGAGTGATGGACAACAAACACATCCTCCGTCTCATTCAGTTCGACAAACCACAGAAAGTGCAAGAAAAACTCAAAGAGAAGACACAGTGA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120815-1 Predicted to enable calcium ion binding activity. Is expressed in epiphysis and retinal outer nuclear layer. Orthologous to human RCVRN (recoverin).

Ensembl:

ensembl_id ENSDART00000187492

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010858 lncRNA upstream 27677 287433 ~ 288561 (+) True XLOC_004422
TCONS_00010857 lncRNA upstream 34973 280141 ~ 281265 (+) True XLOC_004421
TCONS_00010713 lncRNA upstream 113598 198616 ~ 202640 (+) True XLOC_004420
TCONS_00010711 lncRNA upstream 248458 65644 ~ 67780 (+) False XLOC_004419
TCONS_00008890 lncRNA downstream 90646 410038 ~ 456515 (+) False XLOC_004426
TCONS_00010859 lncRNA downstream 90935 410327 ~ 459295 (+) True XLOC_004426
TCONS_00010714 lncRNA downstream 223317 542709 ~ 543010 (+) True XLOC_004429
TCONS_00008899 lncRNA downstream 461607 780999 ~ 782872 (+) True XLOC_004431
TCONS_00010860 lncRNA downstream 572786 892178 ~ 895643 (+) False XLOC_004433
TCONS_00008885 mRNA upstream 115786 197424 ~ 200452 (+) False XLOC_004420
TCONS_00008884 mRNA upstream 266318 47439 ~ 49920 (+) True XLOC_004418
TCONS_00008888 mRNA downstream 68458 387850 ~ 408076 (+) False XLOC_004425
TCONS_00008889 mRNA downstream 70659 390051 ~ 406495 (+) True XLOC_004425
TCONS_00008891 mRNA downstream 146309 465701 ~ 528026 (+) False XLOC_004427
TCONS_00008892 mRNA downstream 146932 466324 ~ 497483 (+) False XLOC_004427
TCONS_00008893 mRNA downstream 180489 499881 ~ 528026 (+) False XLOC_004427
TCONS_00008894 other downstream 190555 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 4177972 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 4732170 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 4733051 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 4737829 5057221 ~ 5057356 (+) True XLOC_004494

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_06331623_06334915.mRNA True 973 mRNA 0.43 3 CI01000047 6331354 ~ 6334956 (+)