RNA id: TCONS_00010714


Basic Information

Item Value
RNA id TCONS_00010714
length 302
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id XLOC_004429
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 542709 ~ 543010 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCTCGTGATCATTAGATGTTATTAAACACCAGTATGGTGCGGCTTAATATCAACTTTAATACAAAAAAgcagccctgggagtaagtattgactaataatgaacaatagcagtacagcatttattaatgagTGCTCATTCGTTAACATGAACTATTAATGAAGGACTTTATTAGCATTATCTAatgtaaaaaataagaataaatattgaattgttcatgttaataaatacattacctaatataaaactttattttaaagtgagaCCCGAATTAAATATTGTGCTTGCCTGAATATAAATCCC

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010859 lncRNA upstream 83414 410327 ~ 459295 (+) True XLOC_004426
TCONS_00008890 lncRNA upstream 86194 410038 ~ 456515 (+) False XLOC_004426
TCONS_00010858 lncRNA upstream 254148 287433 ~ 288561 (+) True XLOC_004422
TCONS_00010857 lncRNA upstream 261444 280141 ~ 281265 (+) True XLOC_004421
TCONS_00010713 lncRNA upstream 340069 198616 ~ 202640 (+) True XLOC_004420
TCONS_00008899 lncRNA downstream 237989 780999 ~ 782872 (+) True XLOC_004431
TCONS_00010860 lncRNA downstream 349168 892178 ~ 895643 (+) False XLOC_004433
TCONS_00010861 lncRNA downstream 349170 892180 ~ 895643 (+) True XLOC_004433
TCONS_00010862 lncRNA downstream 359578 902588 ~ 903652 (+) True XLOC_004434
TCONS_00010863 lncRNA downstream 531393 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00008895 mRNA upstream 2498 532019 ~ 540211 (+) True XLOC_004428
TCONS_00008891 mRNA upstream 14683 465701 ~ 528026 (+) False XLOC_004427
TCONS_00008893 mRNA upstream 14683 499881 ~ 528026 (+) False XLOC_004427
TCONS_00008892 mRNA upstream 45226 466324 ~ 497483 (+) False XLOC_004427
TCONS_00008888 mRNA upstream 134633 387850 ~ 408076 (+) False XLOC_004425
TCONS_00008896 mRNA downstream 95425 638435 ~ 639945 (+) True XLOC_004430
TCONS_00008897 mRNA downstream 152609 695619 ~ 786808 (+) False XLOC_004431
TCONS_00008898 mRNA downstream 220041 763051 ~ 779547 (+) False XLOC_004431
TCONS_00008900 mRNA downstream 261304 804314 ~ 808443 (+) True XLOC_004432
TCONS_00008901 mRNA downstream 457313 1000323 ~ 1010416 (+) False XLOC_004435
TCONS_00008894 other upstream 20887 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 3954354 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 4508552 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 4509433 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 4514211 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 4518557 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

//