RNA id: TCONS_00008895


Basic Information

Item Value
RNA id TCONS_00008895
length 2545
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_004428
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 532019 ~ 540211 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCGTTCTCCCGGTATCCGCTATGGTTCCGCTCGCTAACAGAGTTCCGTTCGGCGCAATGGAGCGACTCTGAACCTGAACGCGTCGGCCCGCTGATATGGAGGAGGCTCCCAGCAGCTCGGACGCTCTCCAGCCTCAGGATCTGTCCTCCGCCTGCAGTCTGCCTGACATTGAGTGTTTATTAAAAGCCAATCCCATCGACGCTCTGCGTGTGGTCCCGACGCCAGCCTGGATCCTCGGTCCCGGGACCAGCAATGGGATTCTGCTTTCAGAGAGCGACTCCGAGCCGACGATTCCCGCAGGTCAGATCCAGCCGGACGAAGCGTTCTCCAACACCACTGTCACGCTGTCCTACGTCAGCCGCTCGCACCTCTTTTCAGAGCATTCCCCAGTGTACGGCGTTCCTTCGGCGTTTCTCCGAGCGTACGATGCAGGGAAGCTGGCAGCGGATGCTGGGGATGTGGACTGTGTCCAGCAGGTCTCCGTACCACTCGGATTAACAACCTGCGAACAGTTGGGATTCCTGACGCCAGAGCAGGTCGTGGAAAACATGGCAGCGCTGTGCTACCTTCAGCAGCCAGATGTGGAAAACCTTGCATTGGAAACGCTCAAGTCTTTACAAGCGAATCCAGGCGAGTGCAGATTTCCCATCAGCGTGGACGAACTCCAGAACGGAGCTGCGAATGGGCTCTGGAGTGTGAATCCATTCCAAGGAGGATTTCCAGAGGAAAACGGCGGCGATGTTGAAGGATTGCATCCGAACGTTAATCCAGAGCTTGTGCTTTTGATCTCCAGATCTGAGGAGCCGCTCATCCTACCCAATGAAGCCACGAGCTTCGCTTTATCGTTAAACCCAGAGTTTGTAAGTCCGTTAGATTCTGCGTTACCTTCCGAAGAGCAAACGCAAGATGATAGTGCACAAAATGCAACTCCCCCTAGTGGACTAATGAATGATGCAATGCAAAAAGAAGCGATCGAAGTCATGAACTCATCATCATGTGTCAAACTAACCAAGCAAACCGAGAACGACGCATCAGATGCGTTCAAAACAAGTGATGACTTGGTCATTAAAACTAAGAAGATTCCAGAGAGGAAGACGCTGCCGCCGAGAGCTGGACGAGGCATGAGGCTCGAAGCCATCGTTCAAAACATGCAACTCTTCAGATGCAAATCAACTCGTGTGGTAAAACCTCGAGGAACAAACAAACCATCGAGGGTAAAAACACACAACAGTGTGTTGGCTGAAAAGACAGAAGTGCAGCATGTACACACCGAGCCAACAGAAGTCAGACGCTCGAGCAGACGCAAAGCCACGATATCTACCTCAACTCCTGTAAAGACGTTTTTAAAATGCACAAAGAATGAGTCGACGAACAGAAACTGTAGTTCGTTAACAAGCAACCAAGGGAATCAAGCAGTGCACAAACATAACGTTTCAATAAAGAAATCCGTCAAACGCAAAAATAAGAAATGCAAAAGCACACCCTTCTTCTCTGCGCAGGAACCTGAAATAAATCTCAAATGTCTCAAGCTGAAGAAGAAGGAGGTGCGGGATGATTCGTTTGCGCCGTATGTTCGCGTGCAGTTTTCGAATTGTACGATTGTCAACTATCCCAATGAGAAACGAGGGAAGAGTAAGACGTCTGCAGGTTTTTTGTCCGGGATAACGCCCGCGACTCCTGGATTTCAACATGGACGGGTTAGCATGGACGGCGAACATCAGGATTTGTTGGTTTGTTGTCTCTGCGGGAGCTCATCTAATGCGATGGATCTCGGAGATCTGCATGGGCCGTATTATGCGGAAGGCTTCAAACCAGCCTCCAAAGTTGCTTCTAATCATCAAGAGGACGAGAATAGTGACTCAGACTCGTCTTTTAGAGGAAAAACCGCTGCTGAGGGAAACTGGACAGACTCTCTGGATTGGAGATGGAGCGGAGttggcgagccagccaggagagtCAGGACAGACTCCCCTATTGATTGGTACAGTCCGCCGGTGGTTCCTCTGCACGAAACAGAGCACTGGTTTCATGAGGACTGCGCCATTTGGTCTGCAGGGGTGTTTCTGGTTCGGGGAAAACTGTATGGGCTGGAAAATGCTGTCAAGTTGGCAAAAGTGTCGGTTTGTTCCACTTGTCAGAGAACAGGAGCGACGCTGGGCTGTGTTTATAAAGGCTGTCTGAACAAATACCACTACACCTGTGCAGTACAGTCAGgCTGTGTATTAAATGAGGATAATTACTCAATGAAATGCAGAAAGCACAAGAACTCCTCATATCATCAGATCAACAGGTGACAGCAGACGGAGAGCAGCACGGCAGATGCTGAGAGCGTGTTCAGACTTCAGTGATTCAGTCTGGAGCTTCACATTCGGAAAGCCTTAAAGACCTCACTGCTGCAGGAGATTCACACTGTATCCGAAATCGCCCACTATACCCTCGTTCACTGTTCCCTACACTGTCAAAAGCATCTCTTCATCAGCAGtttcagtgtttgtttgtgttgctgaactgcattatgggatgttgatctctgctctgtccac

Function

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-291 Predicted to enable metal ion binding activity. Predicted to be involved in circadian regulation of gene expression and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000152272

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010859 lncRNA upstream 72724 410327 ~ 459295 (+) True XLOC_004426
TCONS_00008890 lncRNA upstream 75504 410038 ~ 456515 (+) False XLOC_004426
TCONS_00010858 lncRNA upstream 243458 287433 ~ 288561 (+) True XLOC_004422
TCONS_00010857 lncRNA upstream 250754 280141 ~ 281265 (+) True XLOC_004421
TCONS_00010713 lncRNA upstream 329379 198616 ~ 202640 (+) True XLOC_004420
TCONS_00010714 lncRNA downstream 2498 542709 ~ 543010 (+) True XLOC_004429
TCONS_00008899 lncRNA downstream 240788 780999 ~ 782872 (+) True XLOC_004431
TCONS_00010860 lncRNA downstream 351967 892178 ~ 895643 (+) False XLOC_004433
TCONS_00010861 lncRNA downstream 351969 892180 ~ 895643 (+) True XLOC_004433
TCONS_00010862 lncRNA downstream 362377 902588 ~ 903652 (+) True XLOC_004434
TCONS_00008891 mRNA upstream 3993 465701 ~ 528026 (+) False XLOC_004427
TCONS_00008893 mRNA upstream 3993 499881 ~ 528026 (+) False XLOC_004427
TCONS_00008892 mRNA upstream 34536 466324 ~ 497483 (+) False XLOC_004427
TCONS_00008888 mRNA upstream 123943 387850 ~ 408076 (+) False XLOC_004425
TCONS_00008889 mRNA upstream 125524 390051 ~ 406495 (+) True XLOC_004425
TCONS_00008896 mRNA downstream 98224 638435 ~ 639945 (+) True XLOC_004430
TCONS_00008897 mRNA downstream 155408 695619 ~ 786808 (+) False XLOC_004431
TCONS_00008898 mRNA downstream 222840 763051 ~ 779547 (+) False XLOC_004431
TCONS_00008900 mRNA downstream 264103 804314 ~ 808443 (+) True XLOC_004432
TCONS_00008901 mRNA downstream 460112 1000323 ~ 1010416 (+) False XLOC_004435
TCONS_00008894 other upstream 10197 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 3957153 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 4511351 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 4512232 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 4517010 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 4521356 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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