RNA id: TCONS_00008899


Basic Information

Item Value
RNA id TCONS_00008899
length 633
lncRNA type retained_intron
GC content 0.50
exon number 2
gene id XLOC_004431
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 695619 ~ 786808 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gacagccccgccctaaataactgagAGCCCCCCCTgaataactgatagccccaccctaaatgactgatagccccaccctaaataactgatagcccaaccctaaataactgatagccccaccctaaatggctgatagccccaccctaaataactgatagccccaccctaaataactgatagcccaaCCCTAAATGGCTGATTGCTCCACACTAAATGactagtatataaatatatgtaaatacactactatatacatataaaatgagAAGACTGTAccgcatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgcagaTCGGCATTGTGGGCCGCACGGGCGCCGGGAAGTCCTCCATGACTCTGTGTCTGTTTCGGCTCCTGGAAGCGGCGGCTGGAGAAATCGTCATCGATGATGTGAAGATTTCAGAGATCGGCCTGCATGACCTGCGCTCCAAACTCACCATCATCCCTCAGgagccAGTTCTGTTCTCCGGGACGCTGCGCATGAATCTGGACCCCTTTGAGAGGTACAGTGATGAAGAAGTGTGGAAAGCTCTGGAGCTCTCGCATCTGCAGAAGTTCGTCACCAATCAGGCTGCCAAACTGGAGCTGGAGTGCTCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
ko02010 ABC transporters
ko04976 Bile secretion
ko01523 Antifolate resistance
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050517-16 Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human ABCC3 (ATP binding cassette subfamily C member 3).

Ensembl:

ensembl_id ENSDART00000152287

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010714 lncRNA upstream 237989 542709 ~ 543010 (+) True XLOC_004429
TCONS_00010859 lncRNA upstream 321704 410327 ~ 459295 (+) True XLOC_004426
TCONS_00008890 lncRNA upstream 324484 410038 ~ 456515 (+) False XLOC_004426
TCONS_00010858 lncRNA upstream 492438 287433 ~ 288561 (+) True XLOC_004422
TCONS_00010857 lncRNA upstream 499734 280141 ~ 281265 (+) True XLOC_004421
TCONS_00010860 lncRNA downstream 109306 892178 ~ 895643 (+) False XLOC_004433
TCONS_00010861 lncRNA downstream 109308 892180 ~ 895643 (+) True XLOC_004433
TCONS_00010862 lncRNA downstream 119716 902588 ~ 903652 (+) True XLOC_004434
TCONS_00010863 lncRNA downstream 291531 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00010864 lncRNA downstream 404621 1187493 ~ 1206195 (+) True XLOC_004438
TCONS_00008898 mRNA upstream 1452 763051 ~ 779547 (+) False XLOC_004431
TCONS_00008896 mRNA upstream 141054 638435 ~ 639945 (+) True XLOC_004430
TCONS_00008895 mRNA upstream 240788 532019 ~ 540211 (+) True XLOC_004428
TCONS_00008891 mRNA upstream 252973 465701 ~ 528026 (+) False XLOC_004427
TCONS_00008893 mRNA upstream 252973 499881 ~ 528026 (+) False XLOC_004427
TCONS_00008900 mRNA downstream 21442 804314 ~ 808443 (+) True XLOC_004432
TCONS_00008901 mRNA downstream 217451 1000323 ~ 1010416 (+) False XLOC_004435
TCONS_00008902 mRNA downstream 217654 1000526 ~ 1006626 (+) True XLOC_004435
TCONS_00008903 mRNA downstream 304391 1087263 ~ 1132683 (+) True XLOC_004437
TCONS_00008904 mRNA downstream 356818 1139690 ~ 1241565 (+) False XLOC_004438
TCONS_00008894 other upstream 259177 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 3714492 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 4268690 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 4269571 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 4274349 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 4278695 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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