XLOC_004437 (lmf1)


Basic Information

Item Value
gene id XLOC_004437
gene name lmf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1087263 ~ 1132683 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008903
ATGGCGTCCTCCGGTGAAAGTTCGGAGACCAGCGAGAGTTTCCTTAGAAAGCGACGTGGCGATCCGCTTGTTTTGGATAATACTGCACACGACAGTTGCAGCGACACAAAACGAGACGAACATTCGAGTAAATATGAGAAGAAAGTGGGTGTTTTGGTCCAGAGAGGGTCATTCTGGCTCACGCGCATCGTCCTGCTGAGATCCATCGCCTTCATCTACTTGGTGGCTTTCACTGTCGCCTACAACCAGAATAAGCAGCTGATCGGAGAGAAAGGCCTCATGCCGTGTAAAGATTACCTGAGGAGTGTTAAGCGTTATGTGGGAGGAAAGATTGACCTCTCCGCTCTGTCTTACACTCCTTCAATCCTCTGGTTCATGGACTGGAGCGATATGGATGCAAACCTGGATCTGATTGCGCTGGCAGGAATGGCTCTTTCAGGGTTGGTGCTGTTTTTGGGGTCTGCCAATATGGTCATTATGGGGACGCTGTGGATCCTGTATCACTCCATTGTGAACGTCGGACAGCTTTGGTACTCTTTTGGAtggcacaaacaaacaaagcagtgCCGTTTTCTCCAGAATTCCCTTCAGTGTTTAGTTTTGCATGTGGGATCTCCACCACCCACTTTCCACAAACCACCGACGANTATCTCCGTCTGGACGTTTCGCTGGCTAATCGTGCGCATCATGCTGGGTGCGGGTTTGATCAAGATCAGAGGCGACCGCTGCTGGACGGACCTCACCTGTATGGATTACCATTATGAGGCTCAAACAGTaGTCCCGAACCCCATGTCCTACTACATGCACCGCTCGCCCTGGTGGTTTCACCGCTTCGAGACTCTCAGCAATCACTTTATCGAACTCATCGTGCCTTTCTTCACATTCATGGGCCGCCGGATGTGCATGATCAACGGCGCTCTGCAGATCCTCTTCCAGGTCGTTCTGATCATAAGTGGGAATCTGAGTTTTCTGAACTGGTTGACTATAGTTCCCAGTCTGGCCTGTTTCGATGATTCTGCTCTGGCTTTTCTGTTCCGCCGATCTGGAAACGTCAGACAGACTTTACTGAAGATCCAGACAGAAGAAGCTGAAGGACTCAAAACACCACCTACTAAAGGTTTTTATAAGACTATGTTTAGTTATTTTACGCCtaaattaaaaaTCCCGGTGCTGATGAATCTGCTGAGCTCCAGACAGATGATGAACACCTCGTTTGAACCCCTGCGCATCGTCAACACATACGGAGCTTTCGGCAGCATCACTAAAGAGCGGACGGAGGTGGTTTTTCAGGGCACGCTGAGCCTCAATCACACTGCTGAAGATGTGGTCTGGGAGGAATACGAGTTCATCTGTAAACCTGGAGCTTTGGACAGGAGACCATGCCTTATTTCACCCTATCACTATAGACTCGACTGGCTCATGTGGTTCGCAGCTTTCCAGaCCTATGAGCAGAGTGAGTGGGTTATTCACATTGCTGGTCGACTGCTGGCCAATGACTCCACAATACTGTCTCTAATGGCACACAATCCATTCCAGGACAGAGAGAAACCCAGGTGGATACGAGGAGAGCATTTTCGATATAAATTCACCCGTCCGGGCAGCAACAGTGCGGCCCAGGGGAAATGGTGGGCCAGAAAGCGCATCGGACCCTACTTTCCCCCTGTCAACCTGGACGGCCTTCGCAACTACTTTCAGTCCAGAAACTGGCCTCTGCCGACCGGCGATTAA

Function

symbol description
lmf1 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in familial lipase maturation factor 1 deficiency. Orthologous to human LMF1 (lipase maturation factor 1).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-121031-2 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in familial lipase maturation factor 1 deficiency. Orthologous to human LMF1 (lipase maturation factor 1).

Ensembl:

ensembl_id ENSDARG00000102861

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008903 True 1728 mRNA 0.50 14 1087263 1132683

Neighbor

gene id symbol gene type direction distance location
XLOC_004436 NA coding upstream 9083 1074403 ~ 1078180 (+)
XLOC_004435 si:ch1073-272o11.3 coding upstream 76847 1000323 ~ 1010416 (+)
XLOC_004434 NA coding upstream 183611 902588 ~ 903652 (+)
XLOC_004433 NA coding upstream 191620 892178 ~ 895643 (+)
XLOC_004432 wfikkn2b coding upstream 278820 804314 ~ 808443 (+)
XLOC_004438 RAB26 coding downstream 7007 1139690 ~ 1241565 (+)
XLOC_004439 pemt coding downstream 153959 1286642 ~ 1388444 (+)
XLOC_004440 rasd1 coding downstream 265721 1398404 ~ 1400009 (+)
XLOC_004441 cops3 coding downstream 322464 1455147 ~ 1467915 (+)
XLOC_004442 usp22 coding downstream 336407 1469090 ~ 1526051 (+)
XLOC_004429 NA non-coding upstream 544253 542709 ~ 543010 (+)
XLOC_004426 CT737227.1 non-coding upstream 627968 410038 ~ 459295 (+)
XLOC_004444 NA non-coding downstream 833990 1966673 ~ 2004160 (+)
XLOC_004450 NA non-coding downstream 1445337 2578020 ~ 2607032 (+)
XLOC_004456 NA non-coding downstream 1636882 2769565 ~ 2772390 (+)
XLOC_004469 NA non-coding downstream 2853396 3986079 ~ 3991423 (+)
XLOC_004471 NA non-coding downstream 2959769 4092452 ~ 4093573 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_04845691_04876128 LMF1 coding CI01000047 null 4845691 ~ 4876128 (+)