XLOC_004439 (pemt)


Basic Information

Item Value
gene id XLOC_004439
gene name pemt
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1286642 ~ 1388444 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008905
ATGAGCGGAGAGTCGCTGCTGGACAGAAAACCCGCACCGGACTGTTGTGGAGGATTCAATAACCTGGAGTTCAGTCAGATGGATgttgagtGCATTTGGAATAATTGGTCGATGCctGACATAAATGAACCAGATTTCTGCAATAttattattctcatctgtttccatatttttttttggagcaaggttgcccgaTGGGAGCACAGGACTCGTGGTCTGACCCGTCTGTTTGGTGGGCCATATGTGGCCTGTTATTCGCTGGCCGTCCTAATCCTGCTGCTCAATGTTTACCGGAGCCACAGcGTGACGGTGGCCATGAAGGGTCAATCTCGCTGGGATCTGCTGGAAAACCTGCAGGTTTATTATGCCGGAGCGGCTCTGATGGCCGTCGGTTCTCTGTTGGTCATCAGCAGTTTTCTGGCCCTCGGCGTCACAGGAACATTTCTGGGGGATTATTTCGGCATCCTGATGGATCAGAAGGTGACTGGTTTCCCTTTTAATGTGATGGACAATCCCATGTACTGGGGCAGCACTGCAAACTACCTGGGCCTGGCATTAATGAACGCCAGTCCTATCGGGATCGTCCTGACTGCAGTGGTGGCTTTGTCTTACAAAGTAGCGATCGCATATGAGGGACCGTTCACACAGGAGATCTACAGGCAGAGGAGTCAACGctgcaaacacaaatga
>TCONS_00008906
GAACGCCAGTCCTATCGGGATCGTCCTGACTGCAGTGGTGGCTTTGTCTTACAAAGTAGCGATCGCATATGAGGGACCGTTCACACAGGAGATCTACAGGCAGAGGAGTCAACGctgcaaacacaaatgaagaccaGTAGAAGACCAGCAGAAAAGACCAGAAGAAGACCAGTATACACCAATGCAGACGCCTGACGCTTGTAAATTGCTGATGTACAAATAGAAGATATAGTTAAAGGGACagtccacccaaaaatgtaaattctgtcatcatttactcatcctttacttgttacaaacctgtcttgagtttctttcatctgttaaacacagacttaaaggggcagttcatacaaaaatgtaaataagctcACTGTTTACTCTCCATCAAGTGTTTCTAAACCTATAAGGGtgtcattcttctgttgaacactaaagaagatattttgaagaatgctgaaaacctgtaaccattgacttctgtagtacgaaaataaatagtatggaagttaatggttaccggtttccaacattcttcaaaatatcttctttagagaAGAAACTCTTAATGGTTTAGAAACAAGAACAGGGTGAGTATTTTgatcagaattttcatttttgggtgaactgtccttttaagcaATTCACTGCTCTTAATACCTTCATTGAACATGTGTATTATAAACACTGAcatccttttttaaaaaatgtacactatatatattttataactgcaggttaaatgtatatatactgtGCGCCCTATATACTCAACACCTTaaggggacagttcaccccaaaaaactaaaaattctgtcatcatttactctcattttacttgtttcaaatcttCATGACTTTCTtcattctgctgaacacaaaagaagatattttgaagaatgctgaaaacctgtaaccattgacttgcatagtaggaaaaatgtATAGTATGGTAGTCAGTggttttgttgaacactaaagaagatattttggaaaaaacCCGGtaaacactgacttccatagtatttattttataatggaagtcaatggttacaggtttccgacATACTttagaatatcttctttagtgtttagtagaagaaagaaacttataaaggtttgacttccgttgtaaaaaaaaaaaaataccatgaaGGTCtgtgattacaggtttccagattTCTTCATAATATCCTCTTTTTAAATAATGgtaaaaaccggtaaccattgacttctattatatttgtttttcctacaatggaagacaatggttttcaacattcttcaaaccatcttcttttgttttcgaCAGAAATAAAGGCACTCATAAAAGTGTATATCTACCTAagtgagagtaaatagtgagcaaattcttatttttgggtgaactacccctttaaatcattctgtttgtaatgtaattgaaGATATACTGAAAGAAAAACCCATTGAGTTCAatagtattttctttttctactatgaatgtaaatagttaccggtttccaacattcttcagagtatcttcttttgtgttcaattgaaaaaagaaactcagacaggtttTAAGCAGTGAGTAAATGATCATTGTTTTTTGGGGTGTACTGTTCCTTTAAGAGCACAGATGTAAACTGCACACAGATGATGCGACGGTTAAAACTGTGAATGCAATGACAATCTTCAACTGTAACAATCCAATATTCAGCGTTTCCTAATCTGTAGTCTGATCTTTATTGACTTTACATATGATTCATGACCATAAAAGATCTCCTCAGTTCATTCCTAATGCACGTCCAGGCTTTAGGCTCCATTTGTTTCATGTTCACTCGATGTTCTTTGCTcttttatttgagtttttcttTCCGTAGGTTAAATAAATGGACATGTCCTGTTCG

Function

symbol description
pemt Predicted to enable phosphatidylethanolamine N-methyltransferase activity. Predicted to be involved in phosphatidylcholine biosynthetic process. Predicted to act upstream of or within methylation and phospholipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane and mitochondrial membrane. Predicted to be integral component of membrane. Orthologous to human PEMT (phosphatidylethanolamine N-methyltransferase).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006656 phosphatidylcholine biosynthetic process biological_process
GO:0008654 phospholipid biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000773 phosphatidyl-N-methylethanolamine N-methyltransferase activity molecular_function
GO:0080101 phosphatidyl-N-dimethylethanolamine N-methyltransferase activity molecular_function
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0004608 phosphatidylethanolamine N-methyltransferase activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism

ZFIN:

id description
ZDB-GENE-040426-719 Predicted to enable phosphatidylethanolamine N-methyltransferase activity. Predicted to be involved in phosphatidylcholine biosynthetic process. Predicted to act upstream of or within methylation and phospholipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane and mitochondrial membrane. Predicted to be integral component of membrane. Orthologous to human PEMT (phosphatidylethanolamine N-methyltransferase).

Ensembl:

ensembl_id ENSDARG00000103614

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008905 False 690 mRNA 0.50 13 1286642 1386682
TCONS_00008906 True 1892 mRNA 0.34 2 1385192 1388444

Neighbor

gene id symbol gene type direction distance location
XLOC_004438 RAB26 coding upstream 45077 1139690 ~ 1241565 (+)
XLOC_004437 lmf1 coding upstream 153959 1087263 ~ 1132683 (+)
XLOC_004436 NA coding upstream 208462 1074403 ~ 1078180 (+)
XLOC_004435 si:ch1073-272o11.3 coding upstream 276226 1000323 ~ 1010416 (+)
XLOC_004434 NA coding upstream 382990 902588 ~ 903652 (+)
XLOC_004440 rasd1 coding downstream 9960 1398404 ~ 1400009 (+)
XLOC_004441 cops3 coding downstream 66703 1455147 ~ 1467915 (+)
XLOC_004442 usp22 coding downstream 80646 1469090 ~ 1526051 (+)
XLOC_004443 SLC39A11 coding downstream 203702 1592146 ~ 1741781 (+)
XLOC_004444 NA coding downstream 578229 1966673 ~ 2004160 (+)
XLOC_004433 NA non-coding upstream 390999 892178 ~ 895643 (+)
XLOC_004429 NA non-coding upstream 743632 542709 ~ 543010 (+)
XLOC_004426 CT737227.1 non-coding upstream 827347 410038 ~ 459295 (+)
XLOC_004450 NA non-coding downstream 1189576 2578020 ~ 2607032 (+)
XLOC_004456 NA non-coding downstream 1381121 2769565 ~ 2772390 (+)
XLOC_004469 NA non-coding downstream 2597635 3986079 ~ 3991423 (+)
XLOC_004471 NA non-coding downstream 2704008 4092452 ~ 4093573 (+)

Expression


Co-expression Network