XLOC_004442 (usp22)


Basic Information

Item Value
gene id XLOC_004442
gene name usp22
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1469090 ~ 1526051 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008909
AACAGCCGACTTGGAAAATACAATATCAAAAGTGTGGTCGGTTTTACTGTGGTTAATTATCGCTAATGATGACATATCTGCGGATGTCCGACAAGCGCTCTCCGCATGCGTAACGCACGCGTCTTCGACCCTGTCGCGGCTCGCTGCATTGCCTGACGAAAAAACGGAACAATTGCTGGATAATTCTCCTCGTGACTTCAGTTATTTCGTCGCTGAAAGCCGCAGGAACTCGAATGTGTTTTCTGTCATGAGTCCGGCCGGGTGCTCCCATGTGAACGGCTTCAAAGTGGACAACTGGAAGCAGAATCTGCGGGTCATCTACCAGTGCTTTGTGTGGAGCGGATCTGCCGAAACCAGGAAACGCAAGGCGAAGTCATGTATATGTCACATGTGTGGAGCTCATCTAAATCGGCTGCACTCGTGTCTTCACTGTGTGTTCTTCGGCTGTTTCAGCAAGAAACACATCCACGAACACGCCAAAAACAAGAGACACAACCTAGctataGACCTTTTGTATGGTGGAATATATTGCTTTGTGTGCCAAGACTACATATACGACAAAGACATGGAGCAGATTGCCAAAGAAGAACAAAGAAAAGCGTGGAAATTgcaagGTATTGGAGAGAAATATTCAATGTGGGAACCAACGAAAcgagagctggagctgctgcgaCACAATCCCAAACGGAGGAAAATCACAGCCAACTGCACCATAGgactgCGTGGTTTGATAAACCTGGGCAACACGTGCTTTATGAACTGCATCGTTCAGGCTCTCACACACACTCCGCTGCTGAGGGACTTCTTTCTGTCCGACAGACACAAGTGTGAGATGCAGTCCAACTCCTGCCTCGTGTGTGAGATGTCTCAACTCTTTCAGGAGtttTACTCGGGTCACCGCTCTCCGCACATTCCCTTCCGGCTGCTACATCTAGTGTGGACTCACGCCCGACACCTGGCCGGATACGAGCAGCAGGACGCGCACGAGTTCCTCATCGCCGCGCTCGACGTGCTGCACAGACACTGCAAAGGAGATGACAATGGGAAAAAAGCCAACAACCCAAACCACTGCAACTGCATCATTGACCAAATCTTCACTGGAGGCCTGCAGTCTGACGTCACCTGCCAAGTCTGCCACGGCGTCTCCACCACGATAGACCCATTCTGGGACATCAGCCTGGACCTGCCGGGCTCCTCCACCCCGTTCTGGCCGCTCAGTCCCGGCAGTGATGGCAGTGTGGTGAACGGAGACAGCCACCCGAGCGGAGCCACCACGCTCACAGACTGCCTGCGCAGGTTCACCAGACCCGAACACTTAGGAAGCAGCGCCAAGATAAAATGCAGCGGTTGCCATAGTTACCAGGAGTCCACCAAACAGCTGACGATGAAGAGGCTTCCTATAGTGGCCTGCTTTCACCTCAAAGTAAGAGCAGAGCTGCTTCTCTCTGTCTTGATCTTTCAGCACcccttaaatgtgtttgtgtgtttttcagcGGTTTGAGCACTCGGCGAAACTGCGGAGGAAGATCACCACATACGTGTCCTTTCCTCTGGAGCTCGACATGACGCCCTTTATGGCATCAAGTAAAGAGAGCCGAATGAACGGACAGTACCAGCAGCCAGTAGACTCATTAAACAATGATAACAAGTATTCTCTGTTTGCGGTGGTCAATCATCAGGGCACGTTGGAAAGCGGCCACTACACCACATTCATCCGGCAGCACAAGGACCAGTGGTTTAAATGTGATGACGCCATTATCACTAAAGCCAGCATTAAAGATGTTCTGGATAGCGAGGGGTACTTGTTATTTTACCATAAACAGTTCCTTGAATATGAATAATGGAGGATCCAGACGCGACTGAGTCCAAGCTGTGAAGGGATGAAAAGATGATCTGAGCGAAGGAGGGATGAAAACGCTGTAAATCCTCCACTCGAGAGCGGGCAGACCCCAGAGCCTTCTCACAAACCATGAAAACAAGACATCAAATCAttc
>TCONS_00008910
GTTTTCTGTCATGAGTCCGGCCGGGTGCTCCCATGTGAACGGCTTCAAAGTGGACAACTGGAAGCAGAATCTGCGGGTCATCTACCAGTGCTTTGTGTGGAGCGGATCTGCCGAAACCAGGAAACGCAAGGCGAAGTCATGTATATGTCACATGTGTGGAGCTCATCTAAATCGGCTGCACTCGTGTCTTCACTGTGTGTTCTTCGGCTGTTTCAGCAAGAAACACATCCACGAACACGCCAAAAACAAGAGACACAACCTAGctataGACCTTTTGTATGGTGGAATATATTGCTTTGTGTGCCAAGACTACATATACGACAAAGACATGGAGCAGATTGCCAAAGAAGAACAAAGAAAAGCGTGGAAATTgcaagGTATTGGAGAGAAATATTCAATGTGGGAACCAACGAAAcgagagctggagctgctgcgaCACAATCCCAAACGGAGGAAAATCACAGCCAACTGCACCATAGgactgCGTGGTTTGATAAACCTGGGCAACACGTGCTTTATGAACTGCATCGTTCAGGCTCTCACACACACTCCGCTGCTGAGGGACTTCTTTCTGTCCGACAGACACAAGTGTGAGATGCAGTCCAACTCCTGCCTCGTGTGTGAGATGTCTCAACTCTTTCAGGAGtttTACTCGGGTCACCGCTCTCCGCACATTCCCTTCCGGCTGCTACATCTAGTGTGGACTCACGCCCGACACCTGGCCGGATACGAGCAGCAGGACGCGCACGAGTTCCTCATCGCCGCGCTCGACGTGCTGCACAGACACTGCAAAGATGACAATGGGAAAAAAGCCAACAACCCAAACCACTGCAACTGCATCATTGACCAAATCTTCACTGGAGGCCTGCAGTCTGACGTCACCTGCCAAGTCTGCCACGGCGTCTCCACCACGATAGACCCATTCTGGGACATCAGCCTGGACCTGCCGGGCTCCTCCACCCCGTTCTGGCCGCTCAGTCCCGGCAGTGATGGCAGTGTGGTGAACGGAGACAGCCACCCGAGCGGAGCCACCACGCTCACAGACTGCCTGCGCAGGTTCACCAGACCCGAACACTTAGGAAGCAGCGCCAAGATAAAATGCAGCGGTTGCCATAGTTACCAGGAGTCCACCAAACAGCTGACGATGAAGAGGCTTCCTATAGTGGCCTGCTTTCACCTCAAAcGGTTTGAGCACTCGGCGAAACTGCGGAGGAAGATCACCACATACGTGTCCTTTCCTCTGGAGCTCGACATGACGCCCTTTATGGCATCAAGTAAAGAGAGCCGAATGAACGGACAGTACCAGCAGCCAGTAGACTCATTAAACAATGATAACAAGTATTCTCTGTTTGCGGTGGTCAATCATCAGGGCACGTTGGAAAGCGGCCACTACACCACATTCATCCGGCAGCACAAGGACCAGTGGTTTAAATGTGATGACGCCATTATCACTAAAGCCAGCATTAAAGATGTTCTGGATAGCGAGGGGTACTTGTTATTTTACCATAAACAGTTCCTTGAATATGAATAATGGAGGATCCAGACGCGACTGAGTCCAAGCTGTGAAGGGATGAAAAGATGATCTGAGCGAAGGAGGGATGAAAACGCTGTAAATCCTCCACTCGAGAGCGGGCAGACCCCAGAGCCTTCTCACAAACCATGAAAACAAGACATCAAATCAttcaagaaaagaaagaaagaaagaaagcgtACACGGCTAAACCAATCTGCACTGAGCATCCGGAGCATACTTGacggaaggaggaggaggaggaggaggaggagaaaagcAGCCTCCACCTTTACTACAGAAACACAGACAGACTGACATCACTCTCCCACTCACTTCTGCTGCCCCGCTCTCATGAAGTACATGAGGGAAAAGCGATTCCTTTTTTATTTCTTGGTATGCATTATTGATGTACTGAATGCAAAAGAAAGGTGTTATTGACTTCAGCGTAAACCTATATTGTTGTTTGACGAAATACTGTCTGTGTCCAGCACTTTTAGTTTTCATTCAGACGAGCGTCGCAATcgttctgctctctctctctctctctctctctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctttcttgttTGGTCGAGGGCTGAAAtatatctctctcacacacacacacacacacacacacacacacacagatctatatataaatctatttttataagtcatttgttttttgttcacgTGTCCGATACCCGCATCTTTTTGTgttctgtgattggctgtgagtGCAGAGGAGAGTTTGTGCTTGATCTTTGCTTCCACTGGTTTGGATGTCGCTGCAGGTTTGGTTGCGAaggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgcacaTATGCATATCTGTGTGCGCACTCatgtgcgtgaatgtgtgtgtgtgtgtgagagattgtTTGTATGCAAGtctacgtgtgtgtgtgcatatatgcatattcatgcgcacacacacatttaagtgTGTCCACGGGTGTGCATATATGCATATCTTTGCAAAtacttaaatgtgtgtgtgtgtgtgtgtgtgtatgcgcatgAATATATGCAAATGTGTATGCActtgtgtgtttgcatgtatgcatatctttgtgtgtgcgtgcaagcATGTATGTACGTATGCGCACATTCATGTATGCATATTTGTGTACACACTAATTTGTCTGTGCGCGCACATGCATATctttgtacgtgtgtgtgtgtgtacgcaatCATATTTGCATATTCTTGTACACGTATGtggatgcgtgtgtgtgtgtgtgtgtgtatatatgcatatcCATGTACACACTcccatttttgtgtgtgtgtatgtatgtacgtatatgtatacatgtgtgcactaatatgtttgtttgtgtgtgtgcgtgtgtgtgggagAGTGCATGTAtacactcgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtacaTGTATGCATATCGCTGTACACacttatatatgtgtgtgctgttgattgagtgtatgtgtgtgagagagagtgtatgtgtgcgCATGCAGGTATGTGGccacctgtgtgtttgtgttgttagtgtgtgtgtgtgtgtgtgtactgaatCAGTACTCAAACTTGGCATGCCGTTTAAAGTGGATGCTAACAGACTTTGGGGAGgattttataaatgttaattatgtatctatgtatagtatgtatgtatgtaatgtatgtaaaacaaatcaattgaaaATGGTG
>TCONS_00008911
GCGAAGTCATGTATATGTCACATGTGTGGAGCTCATCTAAATCGGCTGCACTCGTGTCTTCACTGTGTGTTCTTCGGCTGTTTCAGCAAGAAACACATCCACGAACACGCCAAAAACAAGAGACACAACCTAGctataGACCTTTTGTATGGTGGAATATATTGCTTTGTGTGCCAAGACTACATATACGACAAAGACATGGAGCAGATTGCCAAAGAAGAACAAAGAAAAGCGTGGAAATTgcaagGTATTGGAGAGAAATATTCAATGTGGGAACCAACGAAAcgagagctggagctgctgcgaCACAATCCCAAACGGAGGAAAATCACAGCCAACTGCACCATAGgactgCGTGGTTTGATAAACCTGGGCAACACGTGCTTTATGAACTGCATCGTTCAGGCTCTCACACACACTCCGCTGCTGAGGGACTTCTTTCTGTCCGACAGACACAAGTGTGAGATGCAGTCCAACTCCTGCCTCGTGTGTGAGATGTCTCAACTCTTTCAGGAGtttTACTCGGGTCACCGCTCTCCGCACATTCCCTTCCGGCTGCTACATCTAGTGTGGACTCACGCCCGACACCTGGCCGGATACGAGCAGCAGGACGCGCACGAGTTCCTCATCGCCGCGCTCGACGTGCTGCACAGACACTGCAAAGATGACAATGGGAAAAAAGCCAACAACCCAAACCACTGCAACTGCATCATTGACCAAATCTTCACTGGAGGCCTGCAGTCTGACGTCACCTGCCAAGTCTGCCACGGCGTCTCCACCACGATAGACCCATTCTGGGACATCAGCCTGGACCTGCCGGGCTCCTCCACCCCGTTCTGGCCGCTCAGTCCCGGCAGTGATGGCAGTGTGGTGAACGGAGACAGCCACCCGAGCGGAGCCACCACGCTCACAGACTGCCTGCGCAGGTTCACCAGACCCGAACACTTAGGAAGCAGCGCCAAGATAAAATGCAGCGGTTGCCATAGTTACCAGGAGTCCACCAAACAGCTGACGATGAAGAGGCTTCCTATAGTGGCCTGCTTTCACCTCAAAcGGTTTGAGCACTCGGCGAAACTGCGGAGGAAGATCACCACATACGTGTCCTTTCCTCTGGAGCTCGACATGACGCCCTTTATGGCATCAAGTAAAGAGAGCCGAATGAACGGACAGTACCAGCAGCCAGTAGACTCATTAAACAATGATAACAAGTATTCTCTGTTTGCGGTGGTCAATCATCAGGGCACGTTGGAAAGCGGCCACTACACCACATTCATCCGGCAGCACAAGGACCAGTGGTTTAAATGTGATGACGCCATTATCACTAAAGCCAGCATTAAAGATGTTCTGGATAGCGAGGGGTACTTGTTATTTTACCATAAACAGTTCCTTGAATATGAATAATGGAGGATCCAGACGCGACTGAGTCCAAGCTGTGAAGGGATGAAAAGATGATCTGAGCGAAGGAGGGATGAAAACGCTGTAAATCCTCCACTCGAGAGCGGGCAGACCCCAGAGCCTTCTCACAAACCATGAAAACAAGACATCAAATCAttcaagaaaagaaagaaagaaagaaagcgtACACGGCTAAACCAATCTGCACTGAGCATCCGGAGCATACTTGacggaaggaggaggaggaggaggaggaggagaaaagcAGCCTCCACCTTTACTACAGAAACACAGACAGACTGACATCACTCTCCCACTCACTTCTGCTGCCCCGCTCTCATGAAGTACATGAGGGAAAAGCGATTCCTTTTTTATTTCTTGGTATGCATTATTGATGTACTGAATGCAAAAGAAAGGTGTTATTGACTTCAGCGTAAACCTATATTGTTGTTTGACGAAATACTGTCTGTGTCCAGCACTTTTAGTTTTCATTCAGACGAGCGTCGCAATcgttctgctctctctctctctctctctctctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctttcttgttTGGTCGAGGGCTGAAAtatatctctctcacacacacacacacacacacacacacacacacagatctatatataaatctatttttataagtcatttgttttttgttcacgTGTCCGATACCCGCATCTTTTTGTgttctgtgattggctgtgagtGCAGAGGAGAGTTTGTGCTTGATCTTTGCTTCCACTGGTTTGGATGTCGCTGCAGGTTTGGTTGCGAaggtttgtgagtgtgtgtgtgtgttgcgtttCTGATGTTTCCTGGACGACCACCTTTATTTTCATGGCTTGATTCAGCAGTGTTATTCTCAgccacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgcacaTATGCATATCTGTGTGCGCACTCatgtgcgtgaatgtgtgtgtgtgtgtgagagattgtTTGTATGCAAGtctacgtgtgtgtgtgcatatatgcatattcatgcgcacacacacatttaagtgTGTCCACGGGTGTGCATATATGCATATCTTTGCAAAtacttaaatgtgtgtgtgtgtgtgtgtgtgtatgcgcatgAATATATGCAAATGTGTATGCActtgtgtgtttgcatgtatgcatatctttgtgtgtgcgtgcaagcATGTATGTACGTATGCGCACATTCATGTATGCATATTTGTGTACACACTAATTTGTCTGTGCGCGCACATGCATATctttgtacgtgtgtgtgtgtgtacgcaatCATATTTGCATATTCTTGTACACGTATGtggatgcgtgtgtgtgtgtgtgtgtgtatatatgcatatcCATGTACACACTcccatttttgtgtgtgtgtatgtatgtacgtatatgtatacatgtgtgcactaatatgtttgtttgtgtgtgtgcgtgtgtgtgggagAGTGCATGTAtacactcgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtacaTGTATGCATATCGCTGTACACacttatatatgtgtgtgctgttgattgagtgtatgtgtgtgagagagagtgtatgtgtgcgCATGCAGGTATGTGGccacctgtgtgtttgtgttgttagtgtgtgtgtgtgtgtgtgtactgaatCAGTACTCAAACTTGGCATGCCGTTTAAAGTGGATGCTAACAGACTTTGGGGAGgattttataaatgttaattatgtatctatgtatagtatgtatgtatgtaatgtatgtaaaacaaatcaattgaaaATGGTGAAGAAAAa

Function

symbol description
usp22 Predicted to enable thiol-dependent deubiquitinase and zinc ion binding activity. Predicted to act upstream of or within chromatin organization; protein deubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 105. Orthologous to several human genes including USP22 (ubiquitin specific peptidase 22).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0007049 cell cycle biological_process
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060512-211 Predicted to enable thiol-dependent deubiquitinase and zinc ion binding activity. Predicted to act upstream of or within chromatin organization; protein deubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 105. Orthologous to several human genes including USP22 (ubiquitin specific peptidase 22).

Ensembl:

ensembl_id ENSDARG00000040407

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008909 False 1994 mRNA 0.50 12 1469090 1524187
TCONS_00008910 False 3430 mRNA 0.48 14 1469327 1526043
TCONS_00008911 True 3418 mRNA 0.48 12 1492641 1526051

Neighbor

gene id symbol gene type direction distance location
XLOC_004441 cops3 coding upstream 1175 1455147 ~ 1467915 (+)
XLOC_004440 rasd1 coding upstream 69081 1398404 ~ 1400009 (+)
XLOC_004439 pemt coding upstream 80646 1286642 ~ 1388444 (+)
XLOC_004438 RAB26 coding upstream 227525 1139690 ~ 1241565 (+)
XLOC_004437 lmf1 coding upstream 336407 1087263 ~ 1132683 (+)
XLOC_004443 SLC39A11 coding downstream 66095 1592146 ~ 1741781 (+)
XLOC_004444 NA coding downstream 440622 1966673 ~ 2004160 (+)
XLOC_004445 LO018238.1 coding downstream 855162 2381213 ~ 2401234 (+)
XLOC_004446 vstm4b coding downstream 873079 2399130 ~ 2421670 (+)
XLOC_004447 lrrc18b coding downstream 902196 2428247 ~ 2430582 (+)
XLOC_004436 NA non-coding upstream 390910 1074403 ~ 1078180 (+)
XLOC_004434 NA non-coding upstream 565438 902588 ~ 903652 (+)
XLOC_004433 NA non-coding upstream 573447 892178 ~ 895643 (+)
XLOC_004429 NA non-coding upstream 926080 542709 ~ 543010 (+)
XLOC_004426 CT737227.1 non-coding upstream 1009795 410038 ~ 459295 (+)
XLOC_004450 NA non-coding downstream 1051969 2578020 ~ 2607032 (+)
XLOC_004456 NA non-coding downstream 1243514 2769565 ~ 2772390 (+)
XLOC_004469 NA non-coding downstream 2460028 3986079 ~ 3991423 (+)
XLOC_004471 NA non-coding downstream 2566401 4092452 ~ 4093573 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_05185698_05212150 USP22 coding CI01000047 null 5185698 ~ 5212224 (+)
bowfin (Amia calva) AMCG00018257 LOC108274018,LOC108413479,LOC107602438,LOC108437874,LOC107719913 coding CM030135.1 CM030135.1 5591847 ~ 5604149 (+)