AMCG00018257 (LOC108274018,LOC108413479,LOC107602438,LOC108437874,LOC107719913)


Basic Information

Item Value
gene id AMCG00018257
gene name LOC108274018,LOC108413479,LOC107602438,LOC108437874,LOC107719913
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5591847 ~ 5604149 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018257
ccaTAGACTTATTATATGGtggtatatattgttttatgtgtcAAGACTACATATATGATAAAGACATGGAACAGATTGCcaaagaagaacaaagaaaagcatGGAAATTACAAGGAGTTGGCGAGAAGTATTCGACGTGGGAGCCAACGAAGCGGGAGCTGGAGTTACTACGGCACAATCCGAAACGTAGGAAAATAACTACAAACTGCACCATCGGGCTACGGGGCTTAATAAACCTAGGGAACACATGCTTTATGAACTGTATTGTCCAGGCACTTACCCATACTCCCCTCCTACGAGACTTTTTCCTCTCAGACCGACACAAATGCGAAATGCAATCCAATTCCTGTCTGGTGTGTGAAATGTCCCAGCTTTTTCAGGAGTTCTACTCCGGACATCGATCCCCCCACATTCCCTTTAGGCTATTGCACCTGGTGTGGACACACGCGCGGCACTTGGCAGGGTACGAGCAGCAGGACGCGCACGAGTTCCTCATCGCTGCATTGGATGTGTTGCACCGGCACTGCAAAGGTGACGACAACGGAAAAAAGGCCAACAACCCAAACCACTGTAACTGCATCATCGACCAAATCTTCACCGGAGGCCTGCAGTCCGACGTCACCTGTCAAGTCTGCCACGGTGTGTCCACAACTATAGACCCCTTCTGGGACATCAGTCTGGACCTGCCGGGCTCCTCCACGCCCTTCTGGCCCCTGAGCCCGGGCAGCGACGGTGGCGTGGTGAACGGAGAGAGCCACCTGTCCGGGGCCACGACGCTAACAGACTGTCTACGAAGGTTTACGCGGCCAGAGCATCTGGGAAGCAGTGCCAAAATCAAATGTAGCGGCTGCCATAGTTACCAGGAATCCACAAAACAGCTCACGATGAAGAAGCTTCCTATAGTGGCCTGTTTTCATCTCAAACGGTTCGAGCACTCGGCCAAGCTGCGACGGAAGATCACTACGTACGTGTCGTTTCCCCTGGAGCTGGACATGACCCCTTTCATGGCCTCCAGTAAGGAAAGCCGGATGAACGGACAATATCAGCAACCAGTGGACACTTTAAACAACGACAATAAGTATTCCTTGTTTGCAGTAGTCAATCATCAGGGCACACTGGAGAGTGGTCACTACACGAGCTTCATCCGGCAGCACAAGGACCAGTGGTTTAAATGTGACGATGCAATCATCACCAAGGCCAGCATCAAGGATGTGCTAGACAGTGAAGGGTATCTCTTATTTTATCACAAACAGTTCCTGGAGTACGAG

Function

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 isoform X2

GO: NA

KEGG:

id description
K11366 USP22_27_51, UBP8; ubiquitin carboxyl-terminal hydrolase 22/27/51

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018257 True 1268 mRNA 0.51 11 5591847 5604149

Neighbor

gene id symbol gene type direction distance location
AMCG00018255 LOC106933195,LOC107091042,LOC103143274,LOC106958689,LOC108237146,LOC107388092,LOC103481993 coding upstream 63275 5527286 ~ 5528572 (+)
AMCG00018254 LOC108274084,LOC107090247 coding upstream 199365 5381051 ~ 5392482 (+)
AMCG00018249 NA coding upstream 287394 5286386 ~ 5304453 (+)
AMCG00018241 mfsd1,LOC107667128,LOC100697574,LOC107752991,LOC101471794,LOC107085018,LOC108237128,LOC105030909 coding upstream 312922 5271199 ~ 5278925 (+)
AMCG00018244 nme3 coding upstream 358490 5227386 ~ 5233357 (+)
AMCG00018256 LOC101067528 coding downstream 18896 5623045 ~ 5633788 (+)
AMCG00018259 NA coding downstream 84156 5688305 ~ 5738824 (+)
AMCG00018261 NA coding downstream 143920 5748069 ~ 5750422 (+)
AMCG00018260 med9 coding downstream 173627 5777776 ~ 5777991 (+)
AMCG00018266 NA coding downstream 286025 5890174 ~ 5904487 (+)
G115201 NA non-coding upstream 246900 5344487 ~ 5344947 (+)
G115188 NA non-coding upstream 273922 5316453 ~ 5317925 (+)
G115099 NA non-coding upstream 490909 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 777428 4814018 ~ 4814419 (+)
G114985 NA non-coding upstream 998002 4593460 ~ 4593845 (+)
G115331 LOC100136012 non-coding downstream 441881 6046030 ~ 6046534 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 921570 6525719 ~ 6588409 (+)
G115419 NA non-coding downstream 1014029 6618178 ~ 6620097 (+)
G115439 NA non-coding downstream 1049973 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding downstream 1054384 6658533 ~ 6667223 (+)
G115049 NA other upstream 827942 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 987742 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 1398517 4186410 ~ 4193330 (+)
G114551 NA other upstream 2944073 2640846 ~ 2647774 (+)
G114518 NA other upstream 3022909 2491313 ~ 2568938 (+)
G115299 NA other downstream 345314 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 551339 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 1106333 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 2289478 7893627 ~ 7894449 (+)
G115648 NA other downstream 2515629 8119778 ~ 8122171 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004442 usp22 coding NC_007123.7 CM002896.2 1469090 ~ 1526051 (+)
grasscarp (Ctenopharyngodon idella) CI01000047_05185698_05212150 USP22 coding CI01000047 null 5185698 ~ 5212224 (+)