G115439


Basic Information

Item Value
gene id G115439
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6654122 ~ 6678353 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144586
ttAAATCTTTACTTTATTAAAAGATACAAGATGCTTGAAAATGTCTGACAAACTACGATTTTAAGATACAGCAAATCCACACCACGGATTTGTTGCCGATGCAACACAGAGGCACAGAACAATAAGcactttatttgtataaaatacagaaattatgtTGCAGTCTTAAGCACACTTTTTCTTGTTCCATTTCATTTAACACTTTGGAGAAATGCAATCaatgttaaaaaggaaatatctTTCAGACAGTCATGCAACAGGAAGACAGCACTGACACTCTACGCTTCAAGATCCGTTTTTGATCCGatgacattaaaatgtacattaacatattttacaatgtggatattagatttagttttaaagaTACACATGTACTAAGAACTCCTTGCGAGATACTTTTAATGACCGAGTCACACAGAAAAGCGCAGCTGTGCTTAAAGGCTACACTTCATTCTCAGGCCCAAAGTGACATTAAGCTATCTTTTCAGATGGAGATTAACATTTGGCAATTCCTCCACCCCCCTCATTATTACTGATTTTGAAACCTGTCTGCTGAGGATAATTATAAAGTACTTTTATAGCAACTGCAATGAACACTGCAATTCATTCAAATACATCAGAAACATTAATATTCACTGCTTGTCACCATACAGCACACTTCTTCAAAGTATTGAATCTCCACTgcttaatgcatttaaaatcattgGGTCACTTCAATAAAGGCCTAGTGagaattacaaatgtatattgttgGGCTCCTATATATAACTTTACATGCCAGTGTCAACAACTTCCCCAAAACGAAATGCTCCTATTTAGAGCAGCCTAAACCTTTAATCAATATCAGTCCTTGTGTTGTGTCTGCAAGATTTACACTTTCACATAATACATGAATAATCGCAGATTCTTTATTCCTTCCGATTTATTTTAGTATCGCAAGAATaagtcaatatataaaaaatgaaacattacaatTGCATGCCAAAGGACAGTCATTATTGGATTAtctaaataatggaaaatactaatttaaagcAATATTACACTTCCAGTGTAATCTAATGATCTTAGGATTCTTATTTATACTTTAGAGGtttgtttaattacacattggtaaaaaaaaaacaaacaaaaaaaaaaactctgcatttaattttggCAATTTACTAATCAATCATTAGCATAAACAGGTCAGTAATGCTTTGTATActgggttaaaaaaataagtcccTACAGAACAGGTATAAAGACACTGTACTTCAGGTATGtgtggtgcttttttttttattaatctcatCAATTAGTCCttttttcagataaaacaataacaacccATCATTACACTGAGCAAAATCTCCCGTTACATATACCAAAAGCAGACGCATGAAAGTTGCGTAAACAGAAAATCAGAGACTTTTCAGGCAGAAACTTGGTACATAATATACAGACAACAGGCCTTCCACCAAGACAAATGCAATCATAGGGGAGGCTTCATCACTGGCAGAGACATTTATTCTGAACTTAAAATGAGTTATCAACGTAGCAAGACTAAACCTCCATTTACACACTTCAGTTTACACTAAGATATTCGCTCATGAGATCCTAAGACTCATCTCTGCTGTTTTGGTGTTCTCTACCCAGTAGTTTTTGCTAGACTATTTCAGAACACAGGCAGGACTTTATTCATGTATACTACTTAGCCATTTAAATTTCagtatgtacatgtatgtaatcATCACATCCAAACTTGCACTAGATCGAAACACTTAAAACTATAGcgtgaaaatgcattatttatacgAGATATTTTCTCTTAAAGACATGGCTTGTGAAGTGCGAGTCTGCTCTCTCTCCGATCTGTTAGTGAGTGAGTTGCCTTCCTTCGTCTCAGTAAAGTAGTTTCTATCAGTTAAGAGCTGTTTTCAGGGTTTCTCCGACTGCTAAGCTTTGCCTAACTTCCTGTTTGTACAACTTTTGCAATCTGTTTCTGCAAGGCGGCTCCGGGGCAGCGCCTGGGCTTCTACTCGTTCCACTCCTTCTTGATCTGCAGGTTCCACTCCCAGGACAGGTGGTCCGTCTTGTCGTCGTCTGTGAAGTAGGACTTGATGTGGTAGCCACCGCGGACGAGCATGCCTTTGGGCGCCTCTTCCACAGGGGTCATGAACTCATGTTCCTCGACGCGTGGCCCATAGCTGCCCACCATAACTACAGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144586 True 2217 lncRNA 0.37 2 6654122 6678353

Neighbor

gene id symbol gene type direction distance location
AMCG00018279 usp7 coding upstream 36504 6599598 ~ 6617618 (+)
AMCG00018278 grin2a,LOC107690256,LOC107733867 coding upstream 288882 6339451 ~ 6365240 (+)
AMCG00018276 grin2a,LOC107685916,LOC108413991,LOC107690256 coding upstream 344279 6306395 ~ 6309843 (+)
AMCG00018277 grin2a,LOC107568390,LOC107690256,LOC107685916,LOC108413991 coding upstream 404582 6249124 ~ 6249540 (+)
AMCG00018275 NA coding upstream 434906 6216225 ~ 6219216 (+)
AMCG00018282 NA coding downstream 10284 6688637 ~ 6704131 (+)
AMCG00018281 NA coding downstream 53257 6731610 ~ 6732494 (+)
AMCG00018295 NA coding downstream 106897 6785250 ~ 6790463 (+)
AMCG00018297 naa60 coding downstream 113701 6792054 ~ 6798225 (+)
AMCG00018296 carhsp1,LOC107733846,LOC107576530,LOC107590589 coding downstream 137081 6815434 ~ 6818771 (+)
G115419 NA non-coding upstream 34025 6618178 ~ 6620097 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding upstream 65713 6525719 ~ 6588409 (+)
G115331 LOC100136012 non-coding upstream 607588 6046030 ~ 6046534 (+)
G115201 NA non-coding upstream 1309175 5344487 ~ 5344947 (+)
G115188 NA non-coding upstream 1336197 5316453 ~ 5317925 (+)
G115467 NA non-coding downstream 55354 6733707 ~ 6780046 (+)
G115481 NA non-coding downstream 94079 6772432 ~ 6773263 (+)
G115511 NA non-coding downstream 150735 6829088 ~ 6833312 (+)
G115514 NA non-coding downstream 159353 6837706 ~ 6838861 (+)
G115535 NA non-coding downstream 407221 7085574 ~ 7086966 (+)
AMCG00018272 NA other upstream 493506 6155488 ~ 6160616 (+)
G115299 NA other upstream 703105 5949463 ~ 5951017 (+)
G115049 NA other upstream 1890217 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 2050017 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 2460792 4186410 ~ 4193330 (+)
AMCG00018280 NA other downstream 32129 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 1215274 7893627 ~ 7894449 (+)
G115648 NA other downstream 1441425 8119778 ~ 8122171 (+)
G115789 NA other downstream 2015011 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 2521304 9199657 ~ 9206776 (+)

Expression


Co-expression Network