AMCG00018276 (grin2a,LOC107685916,LOC108413991,LOC107690256)


Basic Information

Item Value
gene id AMCG00018276
gene name grin2a,LOC107685916,LOC108413991,LOC107690256
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6306395 ~ 6309843 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018276
ATGGCAAATGACCAGAAGTCCACCTTCTTCCAGTTCGGGGCTTCCATTCAACAAGAAGCCCTCCTGATGCTCAATATAATGGAGGAATACGACTGGCATGTCTTCTCCATAGTGACTAGCAAATTCCCGGGCTACCAGGATTTCATCAGCATCCTCAAGAGCACGGTGGACAACAGCTTCGTGGGATGGGATTTACAGAACATGATCACGCTGGATGCGGTCGCTGGGGACACCAGGACCCAGATCCAGCTGAAGAAGATCCAGTCCTCTGTGATCTTGCTGTATTGTTCCAAAGACGAGGCCGCGTACATTCTGGAAGAGGCGCGCTCTTTGGGTTTGACAGGGTATGGCTTCAACTGGATCGTTCCCAGCCTGACCACTGGGAACACCGAAATCACCCCTGGCGAGTTCCCGTCTGGAATGATCTCGGTGTCCTACGACGAGTGGGACTACCCTCTGGAGGCCCGGGTGCGAGACGGCCTTGGGATTATAACCACAGCGGCGGTCTCCATGCTGGAAGAGTTTGGTGACATACCGGAGGCAAAGACCAGCTGCTTTGGgcaaatggagaaaacaaaactgcctCCCAGTGCATTACACAAGTGA

Function

symbol description
grin2a Enables glutamate-gated calcium ion channel activity. Involved in calcium ion transmembrane import into cytosol and response to ethanol. Located in plasma membrane. Is integral component of plasma membrane. Part of NMDA selective glutamate receptor complex. Implicated in Huntington's disease; bipolar disorder; and schizophrenia. Biomarker of Alzheimer's disease and vascular dementia.

NR:

description
PREDICTED: glutamate receptor ionotropic, NMDA 2A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018276 True 606 mRNA 0.53 2 6306395 6309843

Neighbor

gene id symbol gene type direction distance location
AMCG00018277 grin2a,LOC107568390,LOC107690256,LOC107685916,LOC108413991 coding upstream 56855 6249124 ~ 6249540 (+)
AMCG00018275 NA coding upstream 87179 6216225 ~ 6219216 (+)
AMCG00018273 dexi,LOC107690264,LOC107567922,LOC107733843,LOC107590611,LOC107736577,LOC107685935 coding upstream 180626 6125500 ~ 6125769 (+)
AMCG00018269 NA coding upstream 244814 6060961 ~ 6061581 (+)
AMCG00018270 LOC100707100,LOC102798624,LOC101484267,LOC106579017,LOC107726261 coding upstream 266216 6036080 ~ 6040179 (+)
AMCG00018278 grin2a,LOC107690256,LOC107733867 coding downstream 29608 6339451 ~ 6365240 (+)
AMCG00018279 usp7 coding downstream 289755 6599598 ~ 6617618 (+)
AMCG00018282 NA coding downstream 378794 6688637 ~ 6704131 (+)
AMCG00018281 NA coding downstream 421767 6731610 ~ 6732494 (+)
AMCG00018295 NA coding downstream 475407 6785250 ~ 6790463 (+)
G115331 LOC100136012 non-coding upstream 259861 6046030 ~ 6046534 (+)
G115201 NA non-coding upstream 961448 5344487 ~ 5344947 (+)
G115188 NA non-coding upstream 988470 5316453 ~ 5317925 (+)
G115099 NA non-coding upstream 1205457 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 1491976 4814018 ~ 4814419 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 215876 6525719 ~ 6588409 (+)
G115419 NA non-coding downstream 308335 6618178 ~ 6620097 (+)
G115439 NA non-coding downstream 344279 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding downstream 348690 6658533 ~ 6667223 (+)
G115467 NA non-coding downstream 423864 6733707 ~ 6780046 (+)
AMCG00018272 NA other upstream 145779 6155488 ~ 6160616 (+)
G115299 NA other upstream 355378 5949463 ~ 5951017 (+)
G115049 NA other upstream 1542490 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 1702290 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 2113065 4186410 ~ 4193330 (+)
AMCG00018280 NA other downstream 400639 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 1583784 7893627 ~ 7894449 (+)
G115648 NA other downstream 1809935 8119778 ~ 8122171 (+)
G115789 NA other downstream 2383521 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 2889814 9199657 ~ 9206776 (+)

Expression


Co-expression Network