G115379 (c2h16orf72,LOC105900007,LOC107685917,LOC107590581)


Basic Information

Item Value
gene id G115379
gene name c2h16orf72,LOC105900007,LOC107685917,LOC107590581
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6525719 ~ 6588409 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144512
aaaaaaaaaaaaaaaaaaggggaaaaaaaaaaaaagtgttgaggATTAAGtggcttttattttaagcagcaCGGTGCATTATCTGAGTATTCAGTTCAGATCATTCGATTGCGTTTGTGAGTCGGGGAGTCTGTGATGACATCGCCACACTGGGCTGAGGTCCGCTTCCTAGTGCCAGCATTGTCTAAGTGGAGTGCCATTTCCTCCGATATGAAAGTGTTCAAGTCCACGTCGTGAAGTCCATTTCTTCTACGGCTAGGGTTGGAGCCACCGCTCACGTGGGTTGGGGAACCCGGAGTACTTGAACGGACACTTATGCTCGCCATTGCACCACTAAGACCTGAAAATTCAGAAAGGAAGAATATTTAATTGGTTTGATTACATGGCATGATAGCTGGAACATG

Function

NR:

description
PREDICTED: UPF0472 protein C16orf72 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144512 True 404 lncRNA 0.44 2 6525719 6588409

Neighbor

gene id symbol gene type direction distance location
AMCG00018278 grin2a,LOC107690256,LOC107733867 coding upstream 160479 6339451 ~ 6365240 (+)
AMCG00018276 grin2a,LOC107685916,LOC108413991,LOC107690256 coding upstream 215876 6306395 ~ 6309843 (+)
AMCG00018277 grin2a,LOC107568390,LOC107690256,LOC107685916,LOC108413991 coding upstream 276179 6249124 ~ 6249540 (+)
AMCG00018275 NA coding upstream 306503 6216225 ~ 6219216 (+)
AMCG00018273 dexi,LOC107690264,LOC107567922,LOC107733843,LOC107590611,LOC107736577,LOC107685935 coding upstream 399950 6125500 ~ 6125769 (+)
AMCG00018279 usp7 coding downstream 11189 6599598 ~ 6617618 (+)
AMCG00018282 NA coding downstream 100228 6688637 ~ 6704131 (+)
AMCG00018281 NA coding downstream 143201 6731610 ~ 6732494 (+)
AMCG00018295 NA coding downstream 196841 6785250 ~ 6790463 (+)
AMCG00018297 naa60 coding downstream 203645 6792054 ~ 6798225 (+)
G115331 LOC100136012 non-coding upstream 479185 6046030 ~ 6046534 (+)
G115201 NA non-coding upstream 1180772 5344487 ~ 5344947 (+)
G115188 NA non-coding upstream 1207794 5316453 ~ 5317925 (+)
G115099 NA non-coding upstream 1424781 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 1711300 4814018 ~ 4814419 (+)
G115419 NA non-coding downstream 29769 6618178 ~ 6620097 (+)
G115439 NA non-coding downstream 65713 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding downstream 70124 6658533 ~ 6667223 (+)
G115467 NA non-coding downstream 145298 6733707 ~ 6780046 (+)
G115481 NA non-coding downstream 184023 6772432 ~ 6773263 (+)
AMCG00018272 NA other upstream 365103 6155488 ~ 6160616 (+)
G115299 NA other upstream 574702 5949463 ~ 5951017 (+)
G115049 NA other upstream 1761814 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 1921614 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 2332389 4186410 ~ 4193330 (+)
AMCG00018280 NA other downstream 122073 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 1305218 7893627 ~ 7894449 (+)
G115648 NA other downstream 1531369 8119778 ~ 8122171 (+)
G115789 NA other downstream 2104955 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 2611248 9199657 ~ 9206776 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025393 NA non-coding NC_007114.7 CM002887.2 27594373 ~ 27601473 (+)