AMCG00018278 (grin2a,LOC107690256,LOC107733867)


Basic Information

Item Value
gene id AMCG00018278
gene name grin2a,LOC107690256,LOC107733867
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6339451 ~ 6365240 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018278
ATGGGCAGATGGGAGAACAAGAGCCTGACCCTGAAGTACCCCGTCTGGCCTCGATTCAATTCCTTCGGAGACGCCGAGTCCGACGACAACCACCTGAGCATCGTCACCCTGGAAGAGGCGCCCTTCGTCATCGTGGAGAACGTGGAGCGCCTGACCGGCACCTGCATGCGCAACTCTGTGCCCTGCCGGAAGCACATCAAAGACAACACCACAGAAGAGGGGGGAACGTATATCAAGAAATGCTGCAAGGGGTTCTGCATCGACATCCTGAAGAAAATCGCCAGGAACGTGAAATTCACCTACGACCTTTACCTGGTGACCAATGGGAAGCACGGGAAAAAGATCAACAATGTCTGGAACGGCATGGTTGGAGAGGTCGTTACCAAGAAAGCAGTGATGGCCGTGGGCTCGCTTACGATCAATGAGGAGCGTTCAGAAGTGATTGATTTCTCAGTTCCCTTCGTTGAAACGGGGATTAGTGTGATGGTCTCAAGAAGCAATGGGACAGTGTCGCCATCGGCCTTTCTAGAGCCCTTCAGTGCTTCCGTGTGGGTGATGATGTTTGTGATGCTGCTCATTGTCACAGCGATGGCCGTCTTTATATTTGAGTACCTCAGTCCTCTGGGATTCAACAGGAACCTAGCACAAGGCAGAGATCCCCATGGGCCTTCGTTTACCATTGGAAAAGCCGTGTGGCTGCTATGGGGTCTGGTCTTCAACAACTCTGTGCCTGTGCAGAACCCCAAAGGAACCACAAGTAAAATCATGGTGTCAGTGTGGGCCTTCTTTGCTGTAATCTTCCTGGCCAGCTACACAGCCAACCTGGCAGCTTTCATGATTCAAGAAGAGTTTGTTGACCAAGTGACAGGACTCAGTGACAACAAGtttcagAGCCCATATTCCTACTCTCCGCCCTTTCGGTTCGGGACGGTTCCCAATGGAAGCACAGAAAGGAACATCAGGAACAACTATCCCGATATGCATCAGTACATGGTCAAGTACAACCAGAAAGGAGTGCAGGATGCCCTTGTCAGTCTTAAGACGGGAAAACTGGATGCCTTTATATACGACGCAGCCGTGCTCAACTACATGGCGGGGAGGGACGAGGGCTGTAAGCTGGTGACCATTGGTAGCGGCTATATCTTCGCCACCACGGGCTATGGGATAGCACTGCAGAAAGGCTCGATGTGGAAGCGACAAGTTGACCTGGCAATCCTGGCCATCATTGGAGATGGTGAGATGGAGGAACTGGAAGCACAGTGGCTGACTGGTATCTGCCACAATGAAAAGAATGAAGTCATGAGCAGCCAGCTGGATGTGGACAACATGGCTGGTGTCTTCTACATGCTGGCGGCGGCCATGGCCCTGAGTCTGATCACCTTTGTGTGGGAGCACCTGTTCTACTGGAGACTCCGGTACTGCTTCACTGGGGTCTGCACTGGGACACCTGGGCTGCTGTTCAGTATAAGCAGGGGCATATGGAGCTGCATTCATGGCGTTCACATTGAAGAGAAGAAAAGGTCCTCTGATTTAGATTTCAGCAGTCCTCAGGCCAACATGTTGAAGTTGATTAAGTCGGCCAAAAACATGACCAACATGTCAAACCTTACTGCTTCGAGGATCAACTCCCCGAAAAGGGCTGCGGACTTCATGCATCACGCTGGGCCGATGATAATGGACATGGTGGTGGACAAAGGGAATTTCATATTCGCTGACAATCGGAGCTACCCCCCAAAGGAGGCGCTCTACGGCGACACGGCAGACCTGCAGGCGTATATCGGGAACCGGCACAAAGACAATTTGAACAACTATGTTTTTCAAGGGCAGCACCCTCTAACCCTGAACGAGTCGAACCCCAACACGGTGGAGGTGGCGGTCAGCGCCGACACCACGCAAGGTGGCTCCAAGCCTAGGCAGCTGTGGAAGAAAGCAGGTGAGACTCTCCGTCAAAGCCAGGGCTCTATCCAGGACACCCTCCCCCCAGATGCCAGGCTCTCTATGAAGAGCCAGCGCTATCTCCCCGAAGAGGCGGCCCACTCCGACATCTCTGACTGCTCGAGCCGCGCAACGTCCTACAAAGACCCTGACAACAACCAGAAGCACCACAAGCCCAAggataattttaaaaaaagatccATGACGTCAAAATACCCTCGGGACTGTAGCGAAGTTGAGTTGTCCTACTTAAAGAGCAAGCAAGGCGTACCCACACGTGAAAAGATATATACCATAGACGCAGACAGGGAGCTGGGTTTGCATGTAGATCAGCACCATTTCAGGGAAAACAGGGCGCTTCCAGAGGATTTGGAGTACCCAGAAATGTACCAGGACCACAATGACAACTACAGGAAAGCAGAACCCGTCATCCATCTCAACAGCAGTCCTCTCCACACCGACGACCTCATTCCCAACAacgaaaacaaatacaacatgtaCTCCAAGCATTacactttgaaagaaaaaaacgtgAGCCCCCACGAGACAAACGATAGGTACAAACAGACTCACTGTCGGAGCTGTCTCTCCAAGGTGCCAACTTATTCTGGCCACTATGCTGTCAGATCCCCTTACAATCGGTGTGAGGCCTGCCTGCACATGGGGAACTTATATGACATAAGTGAAGATCAAATGCTTCAGGAAGCCATTAGCCCAATGCACCAGGATGAAATGTTCACTCACTACTGGCCCCAGACTGATGGCCCACAGGTACAGAAGAGGAATAGACTGAGGCTCAGCAGGCAGCATTCCTTTGACAATATCCTTGAGAAGCCCAAGGAGATTGACCTCGGTAGACCAGCACGAAGCGTTAGCTTGAAGGAGAAGGACAGGTTTCTGGAGGACAGCCCTTATGCAAATATGTTTAACATGAAACCTGACAAACTGTTCAGCAGCAAGACTATGCTCTTTAACCACAACCTGGAGGAGAGCAAGCGCAGCAAGTCACTTTATCCCGACCACACCTCAGATAACCCCTTCCTCCATACCTTTCGAGAAGACCAGCGCCTAGTTCACGGGAGAAGTTCCTCGGACATTTATAAACAGTTGGCGCCAGTCAAATCCAGGAACGACAACAACTTGAGGTCTTCAGTAAAGTCAACAGCTTCCTACTGTTCTAGGGATGGGCGGATACCGAATgacatgtacatttcagagcatGTGATGCCTTATGTAGCGAATAAGACTAGTACGTACACCACTCCCCGTGTTCTAAATTCTTGCAGCAATAGACGCGTATACAAGAAAATGCCTAGTATCGAGTCAGATGTTTAA

Function

symbol description
grin2a Enables glutamate-gated calcium ion channel activity. Involved in calcium ion transmembrane import into cytosol and response to ethanol. Located in plasma membrane. Is integral component of plasma membrane. Part of NMDA selective glutamate receptor complex. Implicated in Huntington's disease; bipolar disorder; and schizophrenia. Biomarker of Alzheimer's disease and vascular dementia.

NR:

description
PREDICTED: glutamate receptor ionotropic, NMDA 2A-like

GO: NA

KEGG:

id description
K05209 GRIN2A; glutamate receptor ionotropic, NMDA 2A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018278 True 3270 mRNA 0.51 9 6339451 6365240

Neighbor

gene id symbol gene type direction distance location
AMCG00018276 grin2a,LOC107685916,LOC108413991,LOC107690256 coding upstream 29608 6306395 ~ 6309843 (+)
AMCG00018277 grin2a,LOC107568390,LOC107690256,LOC107685916,LOC108413991 coding upstream 89911 6249124 ~ 6249540 (+)
AMCG00018275 NA coding upstream 120235 6216225 ~ 6219216 (+)
AMCG00018273 dexi,LOC107690264,LOC107567922,LOC107733843,LOC107590611,LOC107736577,LOC107685935 coding upstream 213682 6125500 ~ 6125769 (+)
AMCG00018269 NA coding upstream 277870 6060961 ~ 6061581 (+)
AMCG00018279 usp7 coding downstream 234358 6599598 ~ 6617618 (+)
AMCG00018282 NA coding downstream 323397 6688637 ~ 6704131 (+)
AMCG00018281 NA coding downstream 366370 6731610 ~ 6732494 (+)
AMCG00018295 NA coding downstream 420010 6785250 ~ 6790463 (+)
AMCG00018297 naa60 coding downstream 426814 6792054 ~ 6798225 (+)
G115331 LOC100136012 non-coding upstream 292917 6046030 ~ 6046534 (+)
G115201 NA non-coding upstream 994504 5344487 ~ 5344947 (+)
G115188 NA non-coding upstream 1021526 5316453 ~ 5317925 (+)
G115099 NA non-coding upstream 1238513 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 1525032 4814018 ~ 4814419 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 160479 6525719 ~ 6588409 (+)
G115419 NA non-coding downstream 252938 6618178 ~ 6620097 (+)
G115439 NA non-coding downstream 288882 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding downstream 293293 6658533 ~ 6667223 (+)
G115467 NA non-coding downstream 368467 6733707 ~ 6780046 (+)
AMCG00018272 NA other upstream 178835 6155488 ~ 6160616 (+)
G115299 NA other upstream 388434 5949463 ~ 5951017 (+)
G115049 NA other upstream 1575546 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 1735346 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 2146121 4186410 ~ 4193330 (+)
AMCG00018280 NA other downstream 345242 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 1528387 7893627 ~ 7894449 (+)
G115648 NA other downstream 1754538 8119778 ~ 8122171 (+)
G115789 NA other downstream 2328124 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 2834417 9199657 ~ 9206776 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_00596413_00741443 GRIN2A coding CI01000069 null 596413 ~ 741443 (+)