AMCG00018269


Basic Information

Item Value
gene id AMCG00018269
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6060961 ~ 6061581 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018269
ATGGTAGCACATAGTAACGTGGAAGATAATGCAGCAGTAGAAAACAGAGCCAGAATTGAACTTCAAGCACCAGTACCAGTACCAGCACCAGGACCACCGCGGCACCGAGAGCCACGACACCGGGACACCTCTGAGAGTCAGACACGCTTCCGTCCCTTCAAATCAGAGAAGGACTTCAAAATCATCACTATGACTACCTCGATGTTGGAGATCAGTGGTTTCTACTGGGGTCCTATGGCTGTGGAAGAGGCACAcgccaaattaaaaacagaacccTTGGGGACATTTCTGATTCGGGACAGCAAACAGAAAGATTACTTCTTCACTCTCAGTGTCAGGACAGACACGGGTCCAACCAGTATCCGGATCAATTTCCAGAACTCCCGTTTCAGTCTTGTTGGCAGCAAGGAGTCATTCAATTGTCTGTTTAAACTACTGGAATATTACATTGACTCGCCCAAGAAGAGCCTTGTGAAGCCGCTTAGGAAAGTAAAAGTGCAGCCTTTGCAGGAACTTTGTCGGAAAAGGATTATTGAAACGTTTGGTGGGGAAAACGTGGACGAAATTCCTATAAACTCTGTTTTGAAAGACTTTTTGAACTCCTTTCCATTTCGGATATAA

Function

GO:

id name namespace
GO:0046426 negative regulation of receptor signaling pathway via JAK-STAT biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process

KEGG:

id description
K04694 SOCS1, JAB; suppressor of cytokine signaling 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018269 True 621 mRNA 0.46 1 6060961 6061581

Neighbor

gene id symbol gene type direction distance location
AMCG00018270 LOC100707100,LOC102798624,LOC101484267,LOC106579017,LOC107726261 coding upstream 20782 6036080 ~ 6040179 (+)
AMCG00018271 NA coding upstream 45734 5971814 ~ 6015227 (+)
AMCG00018268 NA coding upstream 97212 5952269 ~ 5963749 (+)
AMCG00018267 NA coding upstream 112369 5935039 ~ 5948592 (+)
AMCG00018266 NA coding upstream 156474 5890174 ~ 5904487 (+)
AMCG00018273 dexi,LOC107690264,LOC107567922,LOC107733843,LOC107590611,LOC107736577,LOC107685935 coding downstream 63919 6125500 ~ 6125769 (+)
AMCG00018275 NA coding downstream 154644 6216225 ~ 6219216 (+)
AMCG00018277 grin2a,LOC107568390,LOC107690256,LOC107685916,LOC108413991 coding downstream 187543 6249124 ~ 6249540 (+)
AMCG00018276 grin2a,LOC107685916,LOC108413991,LOC107690256 coding downstream 244814 6306395 ~ 6309843 (+)
AMCG00018278 grin2a,LOC107690256,LOC107733867 coding downstream 277870 6339451 ~ 6365240 (+)
G115331 LOC100136012 non-coding upstream 14427 6046030 ~ 6046534 (+)
G115201 NA non-coding upstream 716014 5344487 ~ 5344947 (+)
G115188 NA non-coding upstream 743036 5316453 ~ 5317925 (+)
G115099 NA non-coding upstream 960023 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 1246542 4814018 ~ 4814419 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 464138 6525719 ~ 6588409 (+)
G115419 NA non-coding downstream 556597 6618178 ~ 6620097 (+)
G115439 NA non-coding downstream 592541 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding downstream 596952 6658533 ~ 6667223 (+)
G115467 NA non-coding downstream 672126 6733707 ~ 6780046 (+)
G115299 NA other upstream 109944 5949463 ~ 5951017 (+)
G115049 NA other upstream 1297056 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 1456856 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 1867631 4186410 ~ 4193330 (+)
G114551 NA other upstream 3413187 2640846 ~ 2647774 (+)
AMCG00018272 NA other downstream 93907 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 648901 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 1832046 7893627 ~ 7894449 (+)
G115648 NA other downstream 2058197 8119778 ~ 8122171 (+)
G115789 NA other downstream 2631783 8693364 ~ 8694719 (+)

Expression


Co-expression Network