AMCG00018271


Basic Information

Item Value
gene id AMCG00018271
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5971814 ~ 6015227 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018271
ATGGCCAAAGAGAAACGCGTAGGGATTGAAATAAACTGCACTTTGATCTGGGCACTAGCTGGTCACCCTGCCCGATCAGATGCCAAGATGAGTGCAAACCACTTGCTCAGCACTTCTCTCCGATTCTTCCTCAACCAGACAACTCCTCTGCCTGAGAAACAGTCCCATaataaAGTACTGAACATTGATGGAGTCAAGGTAAAGCTGCAGATATGGGACACAGCAGGGCAGGAGCGATTTCGCAGCGTCACACATGCCTACTACCGCGACGCTCATGCTCTATTGTTGCTGTACGATGTCACCAACAAAACATCCTTTGACAACATTCAGTACAAACCCAACAGCCTGGATGTCCCACAGCCGAGACGAGGGCTGCTCAGCCGTGCAAATGTAGCCTGGAGACCCATCTGCGTGGCAGGAGTGGGCAGAGGAAGCCTGTTCTGTGCCGAGCCTACGCAGGTGTGCCGTCTTGACAGTGACACATCGCCACACGCGGGGAACCTGACCTTGCTCCAGTCTCCATTTGATGAGCACCTGTGA

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018271 True 540 mRNA 0.53 8 5971814 6015227

Neighbor

gene id symbol gene type direction distance location
AMCG00018268 NA coding upstream 8065 5952269 ~ 5963749 (+)
AMCG00018267 NA coding upstream 23222 5935039 ~ 5948592 (+)
AMCG00018266 NA coding upstream 67327 5890174 ~ 5904487 (+)
AMCG00018260 med9 coding upstream 193823 5777776 ~ 5777991 (+)
AMCG00018261 NA coding upstream 221392 5748069 ~ 5750422 (+)
AMCG00018270 LOC100707100,LOC102798624,LOC101484267,LOC106579017,LOC107726261 coding downstream 20853 6036080 ~ 6040179 (+)
AMCG00018269 NA coding downstream 45734 6060961 ~ 6061581 (+)
AMCG00018273 dexi,LOC107690264,LOC107567922,LOC107733843,LOC107590611,LOC107736577,LOC107685935 coding downstream 110273 6125500 ~ 6125769 (+)
AMCG00018275 NA coding downstream 200998 6216225 ~ 6219216 (+)
AMCG00018277 grin2a,LOC107568390,LOC107690256,LOC107685916,LOC108413991 coding downstream 233897 6249124 ~ 6249540 (+)
G115201 NA non-coding upstream 626867 5344487 ~ 5344947 (+)
G115188 NA non-coding upstream 653889 5316453 ~ 5317925 (+)
G115099 NA non-coding upstream 870876 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 1157395 4814018 ~ 4814419 (+)
G114985 NA non-coding upstream 1377969 4593460 ~ 4593845 (+)
G115331 LOC100136012 non-coding downstream 30803 6046030 ~ 6046534 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 510492 6525719 ~ 6588409 (+)
G115419 NA non-coding downstream 602951 6618178 ~ 6620097 (+)
G115439 NA non-coding downstream 638895 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding downstream 643306 6658533 ~ 6667223 (+)
G115299 NA other upstream 20797 5949463 ~ 5951017 (+)
G115049 NA other upstream 1207909 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 1367709 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 1778484 4186410 ~ 4193330 (+)
G114551 NA other upstream 3324040 2640846 ~ 2647774 (+)
AMCG00018272 NA other downstream 140261 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 695255 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 1878400 7893627 ~ 7894449 (+)
G115648 NA other downstream 2104551 8119778 ~ 8122171 (+)
G115789 NA other downstream 2678137 8693364 ~ 8694719 (+)

Expression


Co-expression Network