XLOC_004447 (lrrc18b)


Basic Information

Item Value
gene id XLOC_004447
gene name lrrc18b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2428247 ~ 2430582 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008917
CTCTATCAGAGGAATCAAACTGGGGCAAGTTTACCCTGCTGGTTTTTACTTACAGGCTTTGTGCATTATTCACATGGAAGATCCTTATCAGAGACGGCCTGTAATGATCGGCTTGTAGTCAGTCGTTGCTGAGACTCTGTTTGACTCCACACTGCACTGAAAAAGGACAGAGATACAGACACGATGGTGAAGGGAAAGAAGAAATCAAGCGAACCATCAGGTCGAAAAATCACACTTAAGATGGCCAAGAATGCTCTGAAAGTGACCGTAGACGGCAAACGCCGCCTCGACCTCAGCAACATGGCCATCTCCACATTTCCAAAGTGCATCCTGAAACTCTGCGATGTAGACGAGCTAGACCTCAGTCGAAACCTCCTCAAGAAGATCCCAGACGCCATCGACAAATTCGTGAACCTGCGTCTGCTGGATCTGCACAGCAACCATCTGGAGCATCTTCCCGCAGCTATAGGACGTCTGCAAAATCTCCACAACCTCAATCTGTGCAACAACCGTCTCACAAGCTCTAGTCTTCCTCATGAAATGGGCTTCTTGAGAAACTTACGAATCCTCAATTTAGGTATGAACTGCATTGACACTCTTCCTCCGACTGTGTCTGCTCTCAAAGAGCTCAGAGAACTGGGTCTCTTCAATAACCTCCTGACGCAGCTGCCTAAGAGTCTACAAAACCTCCCCAAACTGCAGAAAGTGAACATCAAATCCAACCCAATCCCTTCAGATGAGGATCCAGAAGTGGATCGGATTCAGAGAGTGGAGAGTCTGTATCTGGTGAAGGAGGACTGTCTGTGCAATGACTGTCTGAAGAAGTGTAGAGAGGAAAGAGAGAAGTTGGACAGCCGGATGAGCGCGGCTTCCACATTTAAGAAGTCTATCTTTGCGGGTCTCATAACGCCAAACTCTGTCGCACAAGAAAACCAGGCTGTGTGGAGGTGA

Function

symbol description
lrrc18b Orthologous to human LRRC18 (leucine rich repeat containing 18).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-110315-1 Orthologous to human LRRC18 (leucine rich repeat containing 18).

Ensembl:

ensembl_id ENSDARG00000076236

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008917 True 951 mRNA 0.48 2 2428247 2430582

Neighbor

gene id symbol gene type direction distance location
XLOC_004446 vstm4b coding upstream 6577 2399130 ~ 2421670 (+)
XLOC_004445 LO018238.1 coding upstream 27013 2381213 ~ 2401234 (+)
XLOC_004444 NA coding upstream 424087 1966673 ~ 2004160 (+)
XLOC_004443 SLC39A11 coding upstream 686466 1592146 ~ 1741781 (+)
XLOC_004442 usp22 coding upstream 902196 1469090 ~ 1526051 (+)
XLOC_004448 ARHGAP22 coding downstream 16255 2446837 ~ 2492470 (+)
XLOC_004449 frmpd2 coding downstream 92060 2522642 ~ 2568460 (+)
XLOC_004450 NA coding downstream 147438 2578020 ~ 2607032 (+)
XLOC_004451 gdf10b coding downstream 201129 2631711 ~ 2645640 (+)
XLOC_004452 gdf2 coding downstream 217461 2648043 ~ 2651276 (+)
XLOC_004436 NA non-coding upstream 1350067 1074403 ~ 1078180 (+)
XLOC_004434 NA non-coding upstream 1524595 902588 ~ 903652 (+)
XLOC_004433 NA non-coding upstream 1532604 892178 ~ 895643 (+)
XLOC_004429 NA non-coding upstream 1885237 542709 ~ 543010 (+)
XLOC_004456 NA non-coding downstream 338983 2769565 ~ 2772390 (+)
XLOC_004469 NA non-coding downstream 1555497 3986079 ~ 3991423 (+)
XLOC_004471 NA non-coding downstream 1661870 4092452 ~ 4093573 (+)
XLOC_004472 NA non-coding downstream 1673206 4103788 ~ 4106410 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_05911739_05912506 LRRC18B, LRRC18 coding CI01000047 null 5911639 ~ 5914944 (+)