XLOC_004446 (vstm4b)


Basic Information

Item Value
gene id XLOC_004446
gene name vstm4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2399130 ~ 2421670 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008916
ATGAAGATCTCTGCAGTGCTAACAGCTCTCCTGACTAATCTTCTGCTGGGAAATGTGTGTTCATCCATCAACGTCACAGTCTCTCCGGCTCCCTTCACGGTGGTGGCGGAGGGTCAAAACATCACCCTGTCCTGTCAGGTAAGCCAGCGGAAGCGATCAGCGAGTCTGCCGGTGGTTCGCTGGATGTTTCAACCAGAATCTGGAGGAGAGGAGCTGCTGGTAGCACGAGTGAACATGAAGAGAGCCAAGTTTTACGGGAACTACACCAAGAGCTTCCGCAAGCCCAAAATGAAGCTGACCGTGGTGAAACAGGGCAAGATCTTCAACCTGCTGATCGTGAACATCAGCGAGCGGGACAGGGGTGTGTACAGCTGCAGGGTGCAGGAGTTTAACAAACACCAGGAGCGATGGAAAGCTTCCACCAACAGCTCGGCCTCCACGCAGCTCAGAGtgcatgttctcccagccgGCAGACCAAAGGAGGATCTGTGGAGTCTGTTTGAAGATGTGTATCTGTGTGCTGTGCTGGTGTGTTGTGTCGGACTCTTGTGCATGTGCATGTTCACTATAGCTGTGAGCTGCCAGTATCTACAGAGGAAGAGACGGTTAAAAGAAAACTATCATTTGGTCAAGAGTCCACAGAACAGTTCGGGAGAGACGGTCACTAGCCTGGTCAGTTTGTCTCCAGCTCTTCCCAAGAAGGTCAGAAAGtacaagaaaaacaaaactgtGGAGCAGGCGGATGTTCCACCAGAGATACCGGCTAAAGCCCCTATTGCAGACAAAATGCGCAAGCCGAAGCTTTTAAAACCTCAGCCCAGAAAAGTGGTTTTGCCCAAAATTGCAGAGGAGAGTCTGACATACGCCGAGCTCGAGCTGATCAAGCCATTGCCTGAAGCCAAAGCTGCAAAGACAGGAACCGTGTACGCTCAGATACTCTTCGAGGACAAGCCTgCCACAGAAGCTCAACTTGTGTTGAACCCGGAAAATTCCTTTAAATCTGTCAAACGGCTCAAGTCTGTTTGTTTTCCTTCTTGTTTCGTGCGACGTCCTTTAGTGGAAGAACTTTTTTAG

Function

symbol description
vstm4b Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; myotome; and somite. Orthologous to human VSTM4 (V-set and transmembrane domain containing 4).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080303-17 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; myotome; and somite. Orthologous to human VSTM4 (V-set and transmembrane domain containing 4).

Ensembl:

ensembl_id ENSDARG00000053186

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008916 True 1074 mRNA 0.50 10 2399130 2421670

Neighbor

gene id symbol gene type direction distance location
XLOC_004444 NA coding upstream 394970 1966673 ~ 2004160 (+)
XLOC_004443 SLC39A11 coding upstream 657349 1592146 ~ 1741781 (+)
XLOC_004442 usp22 coding upstream 873079 1469090 ~ 1526051 (+)
XLOC_004441 cops3 coding upstream 931215 1455147 ~ 1467915 (+)
XLOC_004440 rasd1 coding upstream 999121 1398404 ~ 1400009 (+)
XLOC_004447 lrrc18b coding downstream 6577 2428247 ~ 2430582 (+)
XLOC_004448 ARHGAP22 coding downstream 25167 2446837 ~ 2492470 (+)
XLOC_004449 frmpd2 coding downstream 100972 2522642 ~ 2568460 (+)
XLOC_004450 NA coding downstream 156350 2578020 ~ 2607032 (+)
XLOC_004451 gdf10b coding downstream 210041 2631711 ~ 2645640 (+)
XLOC_004436 NA non-coding upstream 1320950 1074403 ~ 1078180 (+)
XLOC_004434 NA non-coding upstream 1495478 902588 ~ 903652 (+)
XLOC_004433 NA non-coding upstream 1503487 892178 ~ 895643 (+)
XLOC_004429 NA non-coding upstream 1856120 542709 ~ 543010 (+)
XLOC_004456 NA non-coding downstream 347895 2769565 ~ 2772390 (+)
XLOC_004469 NA non-coding downstream 1564409 3986079 ~ 3991423 (+)
XLOC_004471 NA non-coding downstream 1670782 4092452 ~ 4093573 (+)
XLOC_004472 NA non-coding downstream 1682118 4103788 ~ 4106410 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_05887388_05899310 VSTM4B coding CI01000047 null 5886222 ~ 5899612 (+)