Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008916 |
| length | 1074 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 10 |
| gene id | XLOC_004446 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 2399130 ~ 2421670 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-080303-17 | Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; myotome; and somite. Orthologous to human VSTM4 (V-set and transmembrane domain containing 4). |
| ensembl_id | ENSDART00000075179 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00010715 | lncRNA | upstream | 394970 | 1966673 ~ 2004160 (+) | True | XLOC_004444 |
| TCONS_00010864 | lncRNA | upstream | 1192935 | 1187493 ~ 1206195 (+) | True | XLOC_004438 |
| TCONS_00010863 | lncRNA | upstream | 1320950 | 1074403 ~ 1078180 (+) | True | XLOC_004436 |
| TCONS_00010862 | lncRNA | upstream | 1495478 | 902588 ~ 903652 (+) | True | XLOC_004434 |
| TCONS_00010861 | lncRNA | upstream | 1503487 | 892180 ~ 895643 (+) | True | XLOC_004433 |
| TCONS_00010716 | lncRNA | downstream | 156350 | 2578020 ~ 2607032 (+) | False | XLOC_004450 |
| TCONS_00008921 | lncRNA | downstream | 156350 | 2578020 ~ 2607032 (+) | True | XLOC_004450 |
| TCONS_00010865 | lncRNA | downstream | 347895 | 2769565 ~ 2772390 (+) | False | XLOC_004456 |
| TCONS_00010866 | lncRNA | downstream | 347919 | 2769589 ~ 2772390 (+) | False | XLOC_004456 |
| TCONS_00010867 | lncRNA | downstream | 347921 | 2769591 ~ 2772390 (+) | False | XLOC_004456 |
| TCONS_00008913 | mRNA | upstream | 657349 | 1592146 ~ 1741781 (+) | False | XLOC_004443 |
| TCONS_00008912 | mRNA | upstream | 657349 | 1592146 ~ 1741781 (+) | False | XLOC_004443 |
| TCONS_00008914 | mRNA | upstream | 657349 | 1609563 ~ 1741781 (+) | True | XLOC_004443 |
| TCONS_00008911 | mRNA | upstream | 873079 | 1492641 ~ 1526051 (+) | True | XLOC_004442 |
| TCONS_00008910 | mRNA | upstream | 873087 | 1469327 ~ 1526043 (+) | False | XLOC_004442 |
| TCONS_00008917 | mRNA | downstream | 6577 | 2428247 ~ 2430582 (+) | True | XLOC_004447 |
| TCONS_00008918 | mRNA | downstream | 25167 | 2446837 ~ 2492470 (+) | False | XLOC_004448 |
| TCONS_00008919 | mRNA | downstream | 33759 | 2455429 ~ 2483810 (+) | True | XLOC_004448 |
| TCONS_00008920 | mRNA | downstream | 100972 | 2522642 ~ 2568460 (+) | True | XLOC_004449 |
| TCONS_00008922 | mRNA | downstream | 210041 | 2631711 ~ 2645640 (+) | True | XLOC_004451 |
| TCONS_00008894 | other | upstream | 1877308 | 509947 ~ 521822 (+) | True | XLOC_004427 |
| TCONS_00008960 | other | downstream | 2075694 | 4497364 ~ 4497479 (+) | True | XLOC_004480 |
| TCONS_00008972 | other | downstream | 2629892 | 5051562 ~ 5051697 (+) | True | XLOC_004492 |
| TCONS_00008973 | other | downstream | 2630773 | 5052443 ~ 5052578 (+) | True | XLOC_004493 |
| TCONS_00008974 | other | downstream | 2635551 | 5057221 ~ 5057356 (+) | True | XLOC_004494 |
| TCONS_00008975 | other | downstream | 2639897 | 5061567 ~ 5061697 (+) | True | XLOC_004495 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000047_05887388_05899310.mRNA | True | 2398 | mRNA | 0.38 | 7 | CI01000047 | 5886222 ~ 5899612 (+) |
