RNA id: TCONS_00008911


Basic Information

Item Value
RNA id TCONS_00008911
length 3418
RNA type mRNA
GC content 0.48
exon number 12
gene id XLOC_004442
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1469090 ~ 1526051 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGAAGTCATGTATATGTCACATGTGTGGAGCTCATCTAAATCGGCTGCACTCGTGTCTTCACTGTGTGTTCTTCGGCTGTTTCAGCAAGAAACACATCCACGAACACGCCAAAAACAAGAGACACAACCTAGctataGACCTTTTGTATGGTGGAATATATTGCTTTGTGTGCCAAGACTACATATACGACAAAGACATGGAGCAGATTGCCAAAGAAGAACAAAGAAAAGCGTGGAAATTgcaagGTATTGGAGAGAAATATTCAATGTGGGAACCAACGAAAcgagagctggagctgctgcgaCACAATCCCAAACGGAGGAAAATCACAGCCAACTGCACCATAGgactgCGTGGTTTGATAAACCTGGGCAACACGTGCTTTATGAACTGCATCGTTCAGGCTCTCACACACACTCCGCTGCTGAGGGACTTCTTTCTGTCCGACAGACACAAGTGTGAGATGCAGTCCAACTCCTGCCTCGTGTGTGAGATGTCTCAACTCTTTCAGGAGtttTACTCGGGTCACCGCTCTCCGCACATTCCCTTCCGGCTGCTACATCTAGTGTGGACTCACGCCCGACACCTGGCCGGATACGAGCAGCAGGACGCGCACGAGTTCCTCATCGCCGCGCTCGACGTGCTGCACAGACACTGCAAAGATGACAATGGGAAAAAAGCCAACAACCCAAACCACTGCAACTGCATCATTGACCAAATCTTCACTGGAGGCCTGCAGTCTGACGTCACCTGCCAAGTCTGCCACGGCGTCTCCACCACGATAGACCCATTCTGGGACATCAGCCTGGACCTGCCGGGCTCCTCCACCCCGTTCTGGCCGCTCAGTCCCGGCAGTGATGGCAGTGTGGTGAACGGAGACAGCCACCCGAGCGGAGCCACCACGCTCACAGACTGCCTGCGCAGGTTCACCAGACCCGAACACTTAGGAAGCAGCGCCAAGATAAAATGCAGCGGTTGCCATAGTTACCAGGAGTCCACCAAACAGCTGACGATGAAGAGGCTTCCTATAGTGGCCTGCTTTCACCTCAAAcGGTTTGAGCACTCGGCGAAACTGCGGAGGAAGATCACCACATACGTGTCCTTTCCTCTGGAGCTCGACATGACGCCCTTTATGGCATCAAGTAAAGAGAGCCGAATGAACGGACAGTACCAGCAGCCAGTAGACTCATTAAACAATGATAACAAGTATTCTCTGTTTGCGGTGGTCAATCATCAGGGCACGTTGGAAAGCGGCCACTACACCACATTCATCCGGCAGCACAAGGACCAGTGGTTTAAATGTGATGACGCCATTATCACTAAAGCCAGCATTAAAGATGTTCTGGATAGCGAGGGGTACTTGTTATTTTACCATAAACAGTTCCTTGAATATGAATAATGGAGGATCCAGACGCGACTGAGTCCAAGCTGTGAAGGGATGAAAAGATGATCTGAGCGAAGGAGGGATGAAAACGCTGTAAATCCTCCACTCGAGAGCGGGCAGACCCCAGAGCCTTCTCACAAACCATGAAAACAAGACATCAAATCAttcaagaaaagaaagaaagaaagaaagcgtACACGGCTAAACCAATCTGCACTGAGCATCCGGAGCATACTTGacggaaggaggaggaggaggaggaggaggagaaaagcAGCCTCCACCTTTACTACAGAAACACAGACAGACTGACATCACTCTCCCACTCACTTCTGCTGCCCCGCTCTCATGAAGTACATGAGGGAAAAGCGATTCCTTTTTTATTTCTTGGTATGCATTATTGATGTACTGAATGCAAAAGAAAGGTGTTATTGACTTCAGCGTAAACCTATATTGTTGTTTGACGAAATACTGTCTGTGTCCAGCACTTTTAGTTTTCATTCAGACGAGCGTCGCAATcgttctgctctctctctctctctctctctctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctttcttgttTGGTCGAGGGCTGAAAtatatctctctcacacacacacacacacacacacacacacacacagatctatatataaatctatttttataagtcatttgttttttgttcacgTGTCCGATACCCGCATCTTTTTGTgttctgtgattggctgtgagtGCAGAGGAGAGTTTGTGCTTGATCTTTGCTTCCACTGGTTTGGATGTCGCTGCAGGTTTGGTTGCGAaggtttgtgagtgtgtgtgtgtgttgcgtttCTGATGTTTCCTGGACGACCACCTTTATTTTCATGGCTTGATTCAGCAGTGTTATTCTCAgccacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgcacaTATGCATATCTGTGTGCGCACTCatgtgcgtgaatgtgtgtgtgtgtgtgagagattgtTTGTATGCAAGtctacgtgtgtgtgtgcatatatgcatattcatgcgcacacacacatttaagtgTGTCCACGGGTGTGCATATATGCATATCTTTGCAAAtacttaaatgtgtgtgtgtgtgtgtgtgtgtatgcgcatgAATATATGCAAATGTGTATGCActtgtgtgtttgcatgtatgcatatctttgtgtgtgcgtgcaagcATGTATGTACGTATGCGCACATTCATGTATGCATATTTGTGTACACACTAATTTGTCTGTGCGCGCACATGCATATctttgtacgtgtgtgtgtgtgtacgcaatCATATTTGCATATTCTTGTACACGTATGtggatgcgtgtgtgtgtgtgtgtgtgtatatatgcatatcCATGTACACACTcccatttttgtgtgtgtgtatgtatgtacgtatatgtatacatgtgtgcactaatatgtttgtttgtgtgtgtgcgtgtgtgtgggagAGTGCATGTAtacactcgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtacaTGTATGCATATCGCTGTACACacttatatatgtgtgtgctgttgattgagtgtatgtgtgtgagagagagtgtatgtgtgcgCATGCAGGTATGTGGccacctgtgtgtttgtgttgttagtgtgtgtgtgtgtgtgtgtactgaatCAGTACTCAAACTTGGCATGCCGTTTAAAGTGGATGCTAACAGACTTTGGGGAGgattttataaatgttaattatgtatctatgtatagtatgtatgtatgtaatgtatgtaaaacaaatcaattgaaaATGGTGAAGAAAAa

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0007049 cell cycle biological_process
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060512-211 Predicted to enable thiol-dependent deubiquitinase and zinc ion binding activity. Predicted to act upstream of or within chromatin organization; protein deubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 105. Orthologous to several human genes including USP22 (ubiquitin specific peptidase 22).

Ensembl:

ensembl_id ENSDART00000152411

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010864 lncRNA upstream 286446 1187493 ~ 1206195 (+) True XLOC_004438
TCONS_00010863 lncRNA upstream 414461 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00010862 lncRNA upstream 588989 902588 ~ 903652 (+) True XLOC_004434
TCONS_00010860 lncRNA upstream 596998 892178 ~ 895643 (+) False XLOC_004433
TCONS_00010715 lncRNA downstream 440622 1966673 ~ 2004160 (+) True XLOC_004444
TCONS_00010716 lncRNA downstream 1051969 2578020 ~ 2607032 (+) False XLOC_004450
TCONS_00008921 lncRNA downstream 1051969 2578020 ~ 2607032 (+) True XLOC_004450
TCONS_00010865 lncRNA downstream 1243514 2769565 ~ 2772390 (+) False XLOC_004456
TCONS_00010866 lncRNA downstream 1243538 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00008908 mRNA upstream 24726 1455147 ~ 1467915 (+) True XLOC_004441
TCONS_00008907 mRNA upstream 92632 1398404 ~ 1400009 (+) True XLOC_004440
TCONS_00008906 mRNA upstream 104197 1385192 ~ 1388444 (+) True XLOC_004439
TCONS_00008905 mRNA upstream 105959 1286642 ~ 1386682 (+) False XLOC_004439
TCONS_00008904 mRNA upstream 251076 1139690 ~ 1241565 (+) False XLOC_004438
TCONS_00008913 mRNA downstream 66095 1592146 ~ 1741781 (+) False XLOC_004443
TCONS_00008912 mRNA downstream 66095 1592146 ~ 1741781 (+) False XLOC_004443
TCONS_00008914 mRNA downstream 83512 1609563 ~ 1741781 (+) True XLOC_004443
TCONS_00008915 mRNA downstream 855162 2381213 ~ 2401234 (+) True XLOC_004445
TCONS_00008916 mRNA downstream 873079 2399130 ~ 2421670 (+) True XLOC_004446
TCONS_00008894 other upstream 970819 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 2971313 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 3525511 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 3526392 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 3531170 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 3535516 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_05185698_05212150.mRNA True 1685 mRNA 0.49 12 CI01000047 5185698 ~ 5212224 (+)
bowfin (Amia calva) AMCG00018257 True 1268 mRNA 0.51 11 CM030135.1 5591847 ~ 5604149 (+)