RNA id: TCONS_00008907


Basic Information

Item Value
RNA id TCONS_00008907
length 1312
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_004440
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1398404 ~ 1400009 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTCacccaacaacacacacacacccaaacaaacCATGATCAAGAAAATGAGTCCGTCGGAAAACGAGTTTGACATCCCGGCGAAAAACTGCTACCGGATGGTGATCCTCGGGTCCACCAAAGTCGGGAAGACGGCGATCGTGTCGCGCTTTCTGAACGGCCGCTTTGAGGAGCAGTACACGCCGACCATTGAGGACTTTCATAGGAAACTCTACAGCATTAAAGGAGATGTGTATCAGCTGGATATTTTGGATACTTCAGGGAACCATCCATTCCCAGCTATGCGGAGACTGTCCATTCTGACCGGTGATGTGTTTATCCTGGTGTTCAGTTTGGACAACCGCGAGTCCTTCCACGAGGTGCAGCGTCTGAAGCAGCAGATCTACGAGACCAAATCCTGCCTTAAAAACAAGACCAAAGAGAACGTGGACGTGCCTCTGGTGATCTGCGGGAACAAGGGCGACCGCGAGTTTTACCGAGAAGTTCAGCGCGACGAGATCGAGCAGCTGATCGCCGGAGACGAGCAATGCGCGTACTTCGAGATCTCCGCTAAAAGGAACACGAACGTGGATCAGATGTTCCAGAGACTCTTTACGCTCGCCAAACTGCCCAATGAGATGAGCCCTGATCTCCATCGCAAGGTGTCCGTGCAGTACTGTGACATCCTGCATAAAAAGTCGCTGAAGAACAAGAAGGTGAAAGACGGCGACGCGTACGGCATTGTCGCGCCTTTCGCGCGCCGCCCGAGCGTGCACAGTGACTTAATGTACATCAAAGAAAAAGCGATAGGAGGTGGACAGACTAAGGATAAAGAAAGGTGTATTATCAGCTAGAGTGAGCCATCTGAAGCCCCTTGCGGTCAGTATAGATGCACACGGTACACTTGCGGTGCCTGTATTGCGGTGACTCCAACAGGATCCAACGCGTCCTGAAGAAACAGTCATCGGCTTGAGCTCTCAGCCTCGTGGAAAAGCGCATGTTATGCTTGCGAGATCTCCTGTACAGAATAATACACACTTTGTTCTGTTCAGCCAGAGGCGCCTCTGTGATGATGATAATACTGTGGCTTATAAGAGTTATCGACTCcatgcttaaaaatgtgctttGTTAAAACATCTGCCTTTTTGAGTGCTGAAGCGGAGAACGGGAGTTGACATGTcagctgtttacatttttatttgagtaaatcaacttgaatgttttaaatgcaGAACAATTTTATATTGTTGATGAATGTATATTTATTCTTCTATGTCACTGTTGAATTTAACTCTTggtaaaagagaaataaaaaaaaacatttgtcaaGAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04713 Circadian entrainment
ko04934 Cushing syndrome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040426-1473 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Orthologous to several human genes including RASD1 (ras related dexamethasone induced 1).

Ensembl:

ensembl_id ENSDART00000026303

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010864 lncRNA upstream 192209 1187493 ~ 1206195 (+) True XLOC_004438
TCONS_00010863 lncRNA upstream 320224 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00010862 lncRNA upstream 494752 902588 ~ 903652 (+) True XLOC_004434
TCONS_00010860 lncRNA upstream 502761 892178 ~ 895643 (+) False XLOC_004433
TCONS_00010715 lncRNA downstream 566664 1966673 ~ 2004160 (+) True XLOC_004444
TCONS_00010716 lncRNA downstream 1178011 2578020 ~ 2607032 (+) False XLOC_004450
TCONS_00008921 lncRNA downstream 1178011 2578020 ~ 2607032 (+) True XLOC_004450
TCONS_00010865 lncRNA downstream 1369556 2769565 ~ 2772390 (+) False XLOC_004456
TCONS_00010866 lncRNA downstream 1369580 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00008906 mRNA upstream 9960 1385192 ~ 1388444 (+) True XLOC_004439
TCONS_00008905 mRNA upstream 11722 1286642 ~ 1386682 (+) False XLOC_004439
TCONS_00008904 mRNA upstream 156839 1139690 ~ 1241565 (+) False XLOC_004438
TCONS_00008903 mRNA upstream 265721 1087263 ~ 1132683 (+) True XLOC_004437
TCONS_00008901 mRNA upstream 387988 1000323 ~ 1010416 (+) False XLOC_004435
TCONS_00008908 mRNA downstream 55138 1455147 ~ 1467915 (+) True XLOC_004441
TCONS_00008909 mRNA downstream 69081 1469090 ~ 1524187 (+) False XLOC_004442
TCONS_00008910 mRNA downstream 69318 1469327 ~ 1526043 (+) False XLOC_004442
TCONS_00008911 mRNA downstream 92632 1492641 ~ 1526051 (+) True XLOC_004442
TCONS_00008913 mRNA downstream 192137 1592146 ~ 1741781 (+) False XLOC_004443
TCONS_00008894 other upstream 876582 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 3097355 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 3651553 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 3652434 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 3657212 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 3661558 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_05104311_05105437.mRNA True 1368 mRNA 0.47 2 CI01000047 5104201 ~ 5105897 (+)