RNA id: TCONS_00008906


Basic Information

Item Value
RNA id TCONS_00008906
length 1892
RNA type mRNA
GC content 0.34
exon number 2
gene id XLOC_004439
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1286642 ~ 1388444 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACGCCAGTCCTATCGGGATCGTCCTGACTGCAGTGGTGGCTTTGTCTTACAAAGTAGCGATCGCATATGAGGGACCGTTCACACAGGAGATCTACAGGCAGAGGAGTCAACGctgcaaacacaaatgaagaccaGTAGAAGACCAGCAGAAAAGACCAGAAGAAGACCAGTATACACCAATGCAGACGCCTGACGCTTGTAAATTGCTGATGTACAAATAGAAGATATAGTTAAAGGGACagtccacccaaaaatgtaaattctgtcatcatttactcatcctttacttgttacaaacctgtcttgagtttctttcatctgttaaacacagacttaaaggggcagttcatacaaaaatgtaaataagctcACTGTTTACTCTCCATCAAGTGTTTCTAAACCTATAAGGGtgtcattcttctgttgaacactaaagaagatattttgaagaatgctgaaaacctgtaaccattgacttctgtagtacgaaaataaatagtatggaagttaatggttaccggtttccaacattcttcaaaatatcttctttagagaAGAAACTCTTAATGGTTTAGAAACAAGAACAGGGTGAGTATTTTgatcagaattttcatttttgggtgaactgtccttttaagcaATTCACTGCTCTTAATACCTTCATTGAACATGTGTATTATAAACACTGAcatccttttttaaaaaatgtacactatatatattttataactgcaggttaaatgtatatatactgtGCGCCCTATATACTCAACACCTTaaggggacagttcaccccaaaaaactaaaaattctgtcatcatttactctcattttacttgtttcaaatcttCATGACTTTCTtcattctgctgaacacaaaagaagatattttgaagaatgctgaaaacctgtaaccattgacttgcatagtaggaaaaatgtATAGTATGGTAGTCAGTggttttgttgaacactaaagaagatattttggaaaaaacCCGGtaaacactgacttccatagtatttattttataatggaagtcaatggttacaggtttccgacATACTttagaatatcttctttagtgtttagtagaagaaagaaacttataaaggtttgacttccgttgtaaaaaaaaaaaaataccatgaaGGTCtgtgattacaggtttccagattTCTTCATAATATCCTCTTTTTAAATAATGgtaaaaaccggtaaccattgacttctattatatttgtttttcctacaatggaagacaatggttttcaacattcttcaaaccatcttcttttgttttcgaCAGAAATAAAGGCACTCATAAAAGTGTATATCTACCTAagtgagagtaaatagtgagcaaattcttatttttgggtgaactacccctttaaatcattctgtttgtaatgtaattgaaGATATACTGAAAGAAAAACCCATTGAGTTCAatagtattttctttttctactatgaatgtaaatagttaccggtttccaacattcttcagagtatcttcttttgtgttcaattgaaaaaagaaactcagacaggtttTAAGCAGTGAGTAAATGATCATTGTTTTTTGGGGTGTACTGTTCCTTTAAGAGCACAGATGTAAACTGCACACAGATGATGCGACGGTTAAAACTGTGAATGCAATGACAATCTTCAACTGTAACAATCCAATATTCAGCGTTTCCTAATCTGTAGTCTGATCTTTATTGACTTTACATATGATTCATGACCATAAAAGATCTCCTCAGTTCATTCCTAATGCACGTCCAGGCTTTAGGCTCCATTTGTTTCATGTTCACTCGATGTTCTTTGCTcttttatttgagtttttcttTCCGTAGGTTAAATAAATGGACATGTCCTGTTCG

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006656 phosphatidylcholine biosynthetic process biological_process
GO:0008654 phospholipid biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000773 phosphatidyl-N-methylethanolamine N-methyltransferase activity molecular_function
GO:0080101 phosphatidyl-N-dimethylethanolamine N-methyltransferase activity molecular_function
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0004608 phosphatidylethanolamine N-methyltransferase activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism

ZFIN:

id description
ZDB-GENE-040426-719 Predicted to enable phosphatidylethanolamine N-methyltransferase activity. Predicted to be involved in phosphatidylcholine biosynthetic process. Predicted to act upstream of or within methylation and phospholipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane and mitochondrial membrane. Predicted to be integral component of membrane. Orthologous to human PEMT (phosphatidylethanolamine N-methyltransferase).

Ensembl:

ensembl_id ENSDART00000160788

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010864 lncRNA upstream 178997 1187493 ~ 1206195 (+) True XLOC_004438
TCONS_00010863 lncRNA upstream 307012 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00010862 lncRNA upstream 481540 902588 ~ 903652 (+) True XLOC_004434
TCONS_00010860 lncRNA upstream 489549 892178 ~ 895643 (+) False XLOC_004433
TCONS_00010715 lncRNA downstream 578229 1966673 ~ 2004160 (+) True XLOC_004444
TCONS_00010716 lncRNA downstream 1189576 2578020 ~ 2607032 (+) False XLOC_004450
TCONS_00008921 lncRNA downstream 1189576 2578020 ~ 2607032 (+) True XLOC_004450
TCONS_00010865 lncRNA downstream 1381121 2769565 ~ 2772390 (+) False XLOC_004456
TCONS_00010866 lncRNA downstream 1381145 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00008904 mRNA upstream 143627 1139690 ~ 1241565 (+) False XLOC_004438
TCONS_00008903 mRNA upstream 252509 1087263 ~ 1132683 (+) True XLOC_004437
TCONS_00008901 mRNA upstream 374776 1000323 ~ 1010416 (+) False XLOC_004435
TCONS_00008902 mRNA upstream 378566 1000526 ~ 1006626 (+) True XLOC_004435
TCONS_00008900 mRNA upstream 576749 804314 ~ 808443 (+) True XLOC_004432
TCONS_00008907 mRNA downstream 9960 1398404 ~ 1400009 (+) True XLOC_004440
TCONS_00008908 mRNA downstream 66703 1455147 ~ 1467915 (+) True XLOC_004441
TCONS_00008909 mRNA downstream 80646 1469090 ~ 1524187 (+) False XLOC_004442
TCONS_00008910 mRNA downstream 80883 1469327 ~ 1526043 (+) False XLOC_004442
TCONS_00008911 mRNA downstream 104197 1492641 ~ 1526051 (+) True XLOC_004442
TCONS_00008894 other upstream 863370 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 3108920 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 3663118 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 3663999 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 3668777 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 3673123 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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