XLOC_004441 (cops3)


Basic Information

Item Value
gene id XLOC_004441
gene name cops3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1455147 ~ 1467915 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008908
ATGGCTTCAGCTTTGGAGCAGTTTGTCAACAATGTGCGGCAACTTTCCGCTCAAGGTCAGATGACTCAACTATGcgagttaataaataaaagtggggAGCTTCTGGCCAAGAATCTCTCTCATCTGGACACTGTTCTTGGCGCTCTGGACATCCAGGAACACTCCCTTGGGGTTTTAGCTGTTCTGTTTGTGAAGTTTTCCATGCCAAACATCCCCGATTTTGAGACCTTGTTTTCCCAAGTCCAGCTCTTCATCAGCACCTGTAATGGAGAACACATCCGATACGCCACAGACACGTTTGCTGGTCTGTGCCACCAGTTAACAAATGCCCTTGTAGAAAGAAAACAGCCCTTGCGTGGAATAAGTATACTTAAACAGGCCATAGACAAGATGCAGATGAACACAAACCAGCTTACCTCAGTGCATGCAGACCTGTGTCAGTTGTGTCTATTAGCTAAGTGCTTCAAACCTGCAGTCCCGTTCCTGGAGTTGGACATGATGGATATTTGCAAGGAGAACGGAGCGTACGATGCAAAGCACTTTCTATGTTATTATTACTATGGTGGCATGATCTACACGGGTCTGAAGAACTTTGAAAGGGCGCTGTATTTTTTTGAACAGGCAATAACCACTCCAGCAATGGCTGTCAGTCACATCATGTTAGAAGCATATAAGAAATACATCCTGGTGTCCCTCATCCTTCATGGCAAAGTTCAGCAGCTTCCCAAATACACGTCACAGATCGTGGGCAGATTCATTAAGaaattaattaattttaaacatcatttagaaaatattgtaaaaactcaaaacataaattcatatAGAAAtttatattttccaaaacaactgacCACTGAGTTAAGGGATCAGAAAATATacatctgtaaacatgttttgtactttaattatgagaaaaatttaaaaacactgacagagaattttttgagtatttctaaaAATGATGTGGAAAAtgttgtgtgtttgtgtgtgtTCCAGCATCTGAGGTGTTTTTCTCTGTCTCAGATCGAGGATGGAGAGATCTATGCAAGCATCAACCAGAAGGACGGCATGGTCTGTTTCCATGACAACCCGGAGAAATACAACAACCCAGCGATGCTCCACAAAATTGACCAAGAGATGCTGAAATGTATAGAGCTGGATGAAAAACTAAAGTCCATGGATCAAGAAATCACTGTAAACCCCCAGTTTGTGCAAAAGAGTATGGGAACACAAGAAGACGATGTCGGCAGCAAGACGTCGAGCTACTCTTGA

Function

symbol description
cops3 Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS3 (COP9 signalosome subunit 3).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0008180 COP9 signalosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-7660 Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS3 (COP9 signalosome subunit 3).

Ensembl:

ensembl_id ENSDARG00000008623

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008908 True 1275 mRNA 0.41 18 1455147 1467915

Neighbor

gene id symbol gene type direction distance location
XLOC_004440 rasd1 coding upstream 55138 1398404 ~ 1400009 (+)
XLOC_004439 pemt coding upstream 66703 1286642 ~ 1388444 (+)
XLOC_004438 RAB26 coding upstream 213582 1139690 ~ 1241565 (+)
XLOC_004437 lmf1 coding upstream 322464 1087263 ~ 1132683 (+)
XLOC_004436 NA coding upstream 376967 1074403 ~ 1078180 (+)
XLOC_004442 usp22 coding downstream 1175 1469090 ~ 1526051 (+)
XLOC_004443 SLC39A11 coding downstream 124231 1592146 ~ 1741781 (+)
XLOC_004444 NA coding downstream 498758 1966673 ~ 2004160 (+)
XLOC_004445 LO018238.1 coding downstream 913298 2381213 ~ 2401234 (+)
XLOC_004446 vstm4b coding downstream 931215 2399130 ~ 2421670 (+)
XLOC_004434 NA non-coding upstream 551495 902588 ~ 903652 (+)
XLOC_004433 NA non-coding upstream 559504 892178 ~ 895643 (+)
XLOC_004429 NA non-coding upstream 912137 542709 ~ 543010 (+)
XLOC_004426 CT737227.1 non-coding upstream 995852 410038 ~ 459295 (+)
XLOC_004450 NA non-coding downstream 1110105 2578020 ~ 2607032 (+)
XLOC_004456 NA non-coding downstream 1301650 2769565 ~ 2772390 (+)
XLOC_004469 NA non-coding downstream 2518164 3986079 ~ 3991423 (+)
XLOC_004471 NA non-coding downstream 2624537 4092452 ~ 4093573 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_05159134_05162486 NA coding CI01000047 null 5157205 ~ 5162595 (+)