XLOC_004450


Basic Information

Item Value
gene id XLOC_004450
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2578020 ~ 2607032 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010716
GAATTCTCCTTCAGAAGTGCGGATGCTTCTCTGCCGTCCCGCTCAAGGAACACTTCCAGCAGTATCAGAGAAAATAGGCCAACTGACCTGCAGCTGAAGCATGACTGATCAAGTCAAAGGAGCATTTCAATGAAGGTCTTCTCCTGGGGGGACCGAACATCTCAGAGAAGTGCATCAGTGCATCATCCCAGAGCAGGACGGATCCTTCAGAAAGGGTTCTCTCAAGAACAGAAGGAGAGTCTGAAGTCTTAATGGCAACTGGTTTCTGCGCTTTACTGGACTTTTACAGGACTGGATGAAAAGTCAGAAAGACACTTCAGTGGCTCTTCTGTGTTCATGCCTGATCAAGCAGAACGATCCGGAGACGAGAAATGGGTTTAATGGACGAGGGAAAAAGAAgcttgtaaagaaaaaaaagactttatgaCTTGGACCGTCGGAATAACAAGACAAAGCAGAGGAAGAAAGACACTTTTACATGCTCAGGGTAAATCGTAATGAATCCTGCTAACAAGACTGTCTTTTGTCTGTTTATCAGTGACATGTTGAATATACTGAAAGGGCTTTATTATTACTGCTCCTATGGTAAACATGCCTATTGCTTACAGCTTCTTTAAGACCGTCTTGGATACTTCGGTCATTGAATTTTACAagaaagaaattatttaaagtttAGAATCATTTTTGggggggaactatccctttaaactgtccctttaagccaAGAGATGGAAATCTCCATGCTATTGGATTAAATAAGCATTTGCTGAAATTTCATCCAGTACAGTTGCCATATTGTTTCTCTTCTGATTCCCTGAGAGGGAAGTGACAACATGACAGATTGATTGGGGACAAATTCCTGCTTCTGCCTTGACAACTTCCCAGCGGGCCACTGTCTGCTTTGTGTTGGCAACAGAGATCTTACTGTGATGATGATGGGCACGCACTTTCTGGACCATCACAGAACTGTTTAGAGAACCCAGAACCTTCAGCTTCATCATGTGTGGAGAACACTATAGTACGTCCAAACATGTTCAACTCTGGCATCATTTCCTCACCACATCATTCCAAATCCATATTCATATTCAACTCCGAAAAGAACAAAGGCAACGTGAAAGTTTAAGTCATGCAAAAGCTTTGTAGGAGGAAAATATCAACATATGAtgttaacaaacacacacaggagcCACGTAGGGCTAGTAATCATTTaaactggttaaataatgatgtaatgtgaaacaggtgatgtccACAGATGATtgcaattatgatttggtacaaaagcagcatccaagaaaggtgtagtcctttaggagcaaagatgggcagagaaTCACC
>TCONS_00008921
GAATTCTCCTTCAGAAGTGCGGATGCTTCTCTGCCGTCCCGCTCAAGGAACACTTCCAGCAGTATCAGAGAAAATAGGCCAACTGACCTGCAGCTGAAGCATGACTGATCAAGTCAAAGGAGCATTTCAATGAAGGTCTTCTCCTGGGGGGACCGAACATCTCAGAGAAGTGCATCAGTGCATCATCCCAGAGCAGGACGGATCCTTCAGAAAGGGTTCTCTCAAGAACAGAAGGAGAGTCTGAAGTCTTAATGGCAACTGGTTTCTGCGCTTTACTGGACTTTTACAGGACTGGATGAAAAGAATCCCATAAGGACGAATGGACTTCTCCACAATCTCCCTCTCTTCACCAGGAGAGGTGCCATCAGGAATTGGAATCAGCCAGTAGTCCTTTCTGCCACACACTTGTCTCATCTCTGGATTGATCCTGTTCTGCATGATGACTCGTCAGAAAGACACTTCAGTGGCTCTTCTGTGTTCATGCCTGATCAAGCAGAACGATCCGGAGACGAGAAATGGGTTTAATGGACGAGGGAAAAAGAAgcttgtaaagaaaaaaaagactttatgaCTTGGACCGTCGGAATAACAAGACAAAGCAGAGGAAGAAAGACACTTTTACATGCTCAGGGTAAATCGTAATGAATCCTGCTAACAAGACTGTCTTTTGTCTGTTTATCAGTGACATGTTGAATATACTGAAAGGGCTTTATTATTACTGCTCCTATGGTAAACATGCCTATTGCTTACAGCTTCTTTAAGACCGTCTTGGATACTTCGGTCATTGAATTTTACAagaaagaaattatttaaagtttAGAATCATTTTTGggggggaactatccctttaaactgtccctttaagccaAGAGATGGAAATCTCCATGCTATTGGATTAAATAAGCATTTGCTGAAATTTCATCCAGTACAGTTGCCATATTGTTTCTCTTCTGATTCCCTGAGAGGGAAGTGACAACATGACAGATTGATTGGGGACAAATTCCTGCTTCTGCCTTGACAACTTCCCAGCGGGCCACTGTCTGCTTTGTGTTGGCAACAGAGATCTTACTGTGATGATGATGGGCACGCACTTTCTGGACCATCACAGAACTGTTTAGAGAACCCAGAACCTTCAGCTTCATCATGTGTGGAGAACACTATAGTACGTCCAAACATGTTCAACTCTGGCATCATTTCCTCACCACATCATTCCAAATCCATATTCATATTCAACTCCGAAAAGAACAAAGGCAACGTGAAAGTTTAAGTCATGCAAAAGCTTTGTAGGAGGAAAATATCAACATATGAtgttaacaaacacacacaggagcCACGTAGGGCTAGTAATCATTTaaactggttaaataatgatgtaatgtgaaacaggtgatgtccACAGATGATtgcaattatgatttggtacaaaagcagcatccaagaaaggtgtagtcctttaggagcaaagatgggcagagaaTCACC

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0009314 response to radiation biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0007603 phototransduction, visible light biological_process
GO:0009416 response to light stimulus biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0005929 cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0016020 membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010716 False 1338 lncRNA 0.42 4 2578020 2607032
TCONS_00008921 True 1482 lncRNA 0.43 5 2578020 2607032

Neighbor

gene id symbol gene type direction distance location
XLOC_004449 frmpd2 coding upstream 9560 2522642 ~ 2568460 (+)
XLOC_004448 ARHGAP22 coding upstream 85550 2446837 ~ 2492470 (+)
XLOC_004447 lrrc18b coding upstream 147438 2428247 ~ 2430582 (+)
XLOC_004446 vstm4b coding upstream 156350 2399130 ~ 2421670 (+)
XLOC_004445 LO018238.1 coding upstream 176786 2381213 ~ 2401234 (+)
XLOC_004451 gdf10b coding downstream 24679 2631711 ~ 2645640 (+)
XLOC_004452 gdf2 coding downstream 41011 2648043 ~ 2651276 (+)
XLOC_004453 irbpl coding downstream 53701 2660733 ~ 2663471 (+)
XLOC_004454 rbp3 coding downstream 58049 2665081 ~ 2670156 (+)
XLOC_004455 antxr1c coding downstream 69846 2676878 ~ 2744646 (+)
XLOC_004444 NA non-coding upstream 573860 1966673 ~ 2004160 (+)
XLOC_004436 NA non-coding upstream 1499840 1074403 ~ 1078180 (+)
XLOC_004434 NA non-coding upstream 1674368 902588 ~ 903652 (+)
XLOC_004433 NA non-coding upstream 1682377 892178 ~ 895643 (+)
XLOC_004429 NA non-coding upstream 2035010 542709 ~ 543010 (+)
XLOC_004456 NA non-coding downstream 162533 2769565 ~ 2772390 (+)
XLOC_004469 NA non-coding downstream 1379047 3986079 ~ 3991423 (+)
XLOC_004471 NA non-coding downstream 1485420 4092452 ~ 4093573 (+)
XLOC_004472 NA non-coding downstream 1496756 4103788 ~ 4106410 (+)
XLOC_004478 NA non-coding downstream 1801627 4408659 ~ 4450452 (+)

Expression


Co-expression Network