XLOC_004453 (irbpl)


Basic Information

Item Value
gene id XLOC_004453
gene name irbpl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2660733 ~ 2663471 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008924
ATGGCAGGAGTTTTTGTGTTTATTCTAGTCACCTATCGGGTTCTGCTCGTCAATGCTTCATTTCAGTCCGCACTTGTTTTGGATATGGCTAAAATTCTGCTCGACAACTACTGCTTCCCGGAGAATCTCATCGGGATGCAGGAGGCAATCCAACAAGCTATAAACAGCGGAGAGATCCTTCACATCTCCGATCGGAAAACGCTGGCATCTGTACTGACTGCTGGCGTTCAAGGTGCACTCAATGACCCCAGACTGACGGTGTCTTACGAGCCTAATTATACTCTGATCACGCCACCTGCATTGCACTCGCTGCCTACCGAACAGCTGATACGGCTAATCAGGAGTACTGTTAAACTGGAGGTGATGGATAATAATATCGGTTACCTGAGGATTGACCGGATTATAGGTCAGGAGACGGTGGTAAAACTGGGACGCCTCCTTCACAATAACATCTGGAAGAAGGTTGCACATACGTCAGCGATGATCTTTGATTTGCGCTTCAGCACTGCTGGAGAGCTTTCCGGTCTGCCATATATCGTGTCCTATTTTTCAGATTCTGATCCACTTTTGCATATCGACACAATTTATGAGAGACCCACCAATATTACGAGGGAGTTATGGACACTGCCGACTCTCCTGGGGGAGAGATTCGGGAAACGCAAGGATTTGATTGTTTTAATCAGCAAGCGCACGATTGGTGCTGCTGAAGGGGTTGCTTATATCTTAAAACATCTAAAGCGAGCTGTGATTATTGGAGAAAGGTCGGCTGGGGGGTCGGTTAGGGTTGATAAGTTAAAGATAGGGGACTCTGGGTTTTATATTACAGTCCCTGTTGCTAGATCTGTGAACCCTGTTACGGGGCAAAGCTGGGAGGTGAGTGGAGTGGCTCCATCAGTCACGGTCAACCCAAAGGAAAGCATTGCTAAAGCTAAATCTCTCATTTCTGTCAGGAAGACAATCCCAAAAGCTGTTAGAAGAGTGTCTGATATAATTAAGCGATATTATTCGTTTAAAGATAAAATCCCGGCTTTGCTAAATCAACTAGCCAAAGCTGACTATTTCACAGTGGTCTCTGAGGAGGATTTGGCGGGAAAACTTAATCATGAGATGCAGTCAGTCTTTGAAGACCCTCGGTTGCTTATTAAAGCAACGCAAGTATTGACAGACGATGCATCTTCTGAGGATCGATCATCTTCGGATGATCTCACTGATCCATTATTCAAGTTAGAAATGATTTCCGGAAACAATGGATATCTGCGCTTTGACAGGTTCCCTACACCTGAGGTTTTGTTAAGACTGGAGGATCATATCAAAAAGAAGATCTGGCAACCAGTCCAAGAGACAGAGAATCTTGTTATTGATCTGCGATTTAACACTGGTGGATCCACCGAGGCATTGCCGATATTGCTTTCCTACATGTTCGACACATCATCGAGTACCTACCTCTTTTCAATTTACGACAGCATCAAAAACACGACCTTCGATTTTCACACCCTCAATAACATCAGTGGACCATCCTATGGCTCCACAAAGGGTGTTTATGTTTTAACAAGCTATTACACAGCAGAAGCAGGAGAGGAGTTTGCTTACCTAATGCAGTCCTTGCACAGAGGAACCGTTATTGGGGAAATCACCTCAGGAATGCTCCTACACTCCAAGACTTTTCAGATTGAACAAACAAGCCTTGCCATCACAGTCCCAATCATAAATTTCATTGATGTAAATGGGGAGTGCTGGCTTGGAGGCGGCGTCGTTCCTGATGCCATCGTGCTCGCTGAAGAAGCACTCGAGCGAGCTCATGAAATCATTGCCTTTCACAAGAATATTCAGGGATTGGTGCAAGAAGCTGGAGATCTCTTGGAAAAACATTACAGTGTGCCTGAGGTTGCAGCTAAAGTGAGTAGACTGTTGCAGTCTAAACTAACCGAGGGACTGTACCGCTCTGTTGTCGACTATGAATCTCTTGCATCTCAGCTCACTTCAGATCTCCAAGAGACCTCGGGTGATCAGAGACTGCATATTTTTTACTGTGAAACTGAGCCGGAAACTCTtcatgatactcctaaaatcccTTCCCCTGAAGAGGCAGGGTTCATCGTTGAGGCCTTGTTCAAAGTAGATGTGATGTCTGGAAATATTGGCTATTTGAGATTCGACATGATGGAAGACATAAAGGTTCTGCAAGCAATTAATCCCGAGTTCCTCAAAGTCGTATGGAACAAGCTGGTGAACACAGACATGCTCATAATTGACGTGAGATATAACACCGGCGGATACTCTACAGCTATTCCTCTACTTTGCACCTATTTTTTTGATGCACAACCGCTGACACACATTTACACCCTTTTTGACCGCTCCACAGCAACTGTGACCAAAGTTACGACTCTTCCAGATGTGCTTGGACAGAAGTACAGCTCTCAGAAAGATGtttatattttgacaagtcaCATAACTGGATCAGCCGCTGAGGCATTTACTAGAACAATGAAAGACCTGAAAAGGGCCACTGTAATCGGAGAGCCCACAATTGGAGGTGCTCTCTCGAGTGGAACTTACCAAATCGGGAATAGCATCCTTTATGCTTCGATTCCCAAtcaggcagttctgaatgcagtTACTGGAAAACCATGGAGCATTTCAGGAGTTGAACCACATATAGTAGCTCAAGCAAGTGATGCACTTATTGTTGCACAGAAAATCATAGCCactaaacaacaaaagaaaaactcaGGAAAATAG

Function

symbol description
irbpl Predicted to enable serine-type peptidase activity. Predicted to act upstream of or within proteolysis. Is expressed in eye; pineal complex; and retinal inner nuclear layer.

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0006508 proteolysis biological_process
GO:0005501 retinoid binding molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070301-4 Predicted to enable serine-type peptidase activity. Predicted to act upstream of or within proteolysis. Is expressed in eye; pineal complex; and retinal inner nuclear layer.

Ensembl:

ensembl_id ENSDARG00000096519

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008924 True 2739 mRNA 0.45 1 2660733 2663471

Neighbor

gene id symbol gene type direction distance location
XLOC_004452 gdf2 coding upstream 9457 2648043 ~ 2651276 (+)
XLOC_004451 gdf10b coding upstream 15093 2631711 ~ 2645640 (+)
XLOC_004450 NA coding upstream 53701 2578020 ~ 2607032 (+)
XLOC_004449 frmpd2 coding upstream 92273 2522642 ~ 2568460 (+)
XLOC_004448 ARHGAP22 coding upstream 168263 2446837 ~ 2492470 (+)
XLOC_004454 rbp3 coding downstream 1610 2665081 ~ 2670156 (+)
XLOC_004455 antxr1c coding downstream 13407 2676878 ~ 2744646 (+)
XLOC_004456 NA coding downstream 106094 2769565 ~ 2772390 (+)
XLOC_004457 mms19 coding downstream 141034 2804505 ~ 2848288 (+)
XLOC_004458 prkar1ab coding downstream 207200 2870671 ~ 2895802 (+)
XLOC_004444 NA non-coding upstream 656573 1966673 ~ 2004160 (+)
XLOC_004436 NA non-coding upstream 1582553 1074403 ~ 1078180 (+)
XLOC_004434 NA non-coding upstream 1757081 902588 ~ 903652 (+)
XLOC_004433 NA non-coding upstream 1765090 892178 ~ 895643 (+)
XLOC_004469 NA non-coding downstream 1322608 3986079 ~ 3991423 (+)
XLOC_004471 NA non-coding downstream 1428981 4092452 ~ 4093573 (+)
XLOC_004472 NA non-coding downstream 1440317 4103788 ~ 4106410 (+)
XLOC_004478 NA non-coding downstream 1745188 4408659 ~ 4450452 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_06058032_06060776 RBP3, IRBP coding CI01000047 null 6058032 ~ 6060994 (+)