RNA id: TCONS_00008924


Basic Information

Item Value
RNA id TCONS_00008924
length 2739
RNA type mRNA
GC content 0.45
exon number 1
gene id XLOC_004453
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2660733 ~ 2663471 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAGGAGTTTTTGTGTTTATTCTAGTCACCTATCGGGTTCTGCTCGTCAATGCTTCATTTCAGTCCGCACTTGTTTTGGATATGGCTAAAATTCTGCTCGACAACTACTGCTTCCCGGAGAATCTCATCGGGATGCAGGAGGCAATCCAACAAGCTATAAACAGCGGAGAGATCCTTCACATCTCCGATCGGAAAACGCTGGCATCTGTACTGACTGCTGGCGTTCAAGGTGCACTCAATGACCCCAGACTGACGGTGTCTTACGAGCCTAATTATACTCTGATCACGCCACCTGCATTGCACTCGCTGCCTACCGAACAGCTGATACGGCTAATCAGGAGTACTGTTAAACTGGAGGTGATGGATAATAATATCGGTTACCTGAGGATTGACCGGATTATAGGTCAGGAGACGGTGGTAAAACTGGGACGCCTCCTTCACAATAACATCTGGAAGAAGGTTGCACATACGTCAGCGATGATCTTTGATTTGCGCTTCAGCACTGCTGGAGAGCTTTCCGGTCTGCCATATATCGTGTCCTATTTTTCAGATTCTGATCCACTTTTGCATATCGACACAATTTATGAGAGACCCACCAATATTACGAGGGAGTTATGGACACTGCCGACTCTCCTGGGGGAGAGATTCGGGAAACGCAAGGATTTGATTGTTTTAATCAGCAAGCGCACGATTGGTGCTGCTGAAGGGGTTGCTTATATCTTAAAACATCTAAAGCGAGCTGTGATTATTGGAGAAAGGTCGGCTGGGGGGTCGGTTAGGGTTGATAAGTTAAAGATAGGGGACTCTGGGTTTTATATTACAGTCCCTGTTGCTAGATCTGTGAACCCTGTTACGGGGCAAAGCTGGGAGGTGAGTGGAGTGGCTCCATCAGTCACGGTCAACCCAAAGGAAAGCATTGCTAAAGCTAAATCTCTCATTTCTGTCAGGAAGACAATCCCAAAAGCTGTTAGAAGAGTGTCTGATATAATTAAGCGATATTATTCGTTTAAAGATAAAATCCCGGCTTTGCTAAATCAACTAGCCAAAGCTGACTATTTCACAGTGGTCTCTGAGGAGGATTTGGCGGGAAAACTTAATCATGAGATGCAGTCAGTCTTTGAAGACCCTCGGTTGCTTATTAAAGCAACGCAAGTATTGACAGACGATGCATCTTCTGAGGATCGATCATCTTCGGATGATCTCACTGATCCATTATTCAAGTTAGAAATGATTTCCGGAAACAATGGATATCTGCGCTTTGACAGGTTCCCTACACCTGAGGTTTTGTTAAGACTGGAGGATCATATCAAAAAGAAGATCTGGCAACCAGTCCAAGAGACAGAGAATCTTGTTATTGATCTGCGATTTAACACTGGTGGATCCACCGAGGCATTGCCGATATTGCTTTCCTACATGTTCGACACATCATCGAGTACCTACCTCTTTTCAATTTACGACAGCATCAAAAACACGACCTTCGATTTTCACACCCTCAATAACATCAGTGGACCATCCTATGGCTCCACAAAGGGTGTTTATGTTTTAACAAGCTATTACACAGCAGAAGCAGGAGAGGAGTTTGCTTACCTAATGCAGTCCTTGCACAGAGGAACCGTTATTGGGGAAATCACCTCAGGAATGCTCCTACACTCCAAGACTTTTCAGATTGAACAAACAAGCCTTGCCATCACAGTCCCAATCATAAATTTCATTGATGTAAATGGGGAGTGCTGGCTTGGAGGCGGCGTCGTTCCTGATGCCATCGTGCTCGCTGAAGAAGCACTCGAGCGAGCTCATGAAATCATTGCCTTTCACAAGAATATTCAGGGATTGGTGCAAGAAGCTGGAGATCTCTTGGAAAAACATTACAGTGTGCCTGAGGTTGCAGCTAAAGTGAGTAGACTGTTGCAGTCTAAACTAACCGAGGGACTGTACCGCTCTGTTGTCGACTATGAATCTCTTGCATCTCAGCTCACTTCAGATCTCCAAGAGACCTCGGGTGATCAGAGACTGCATATTTTTTACTGTGAAACTGAGCCGGAAACTCTtcatgatactcctaaaatcccTTCCCCTGAAGAGGCAGGGTTCATCGTTGAGGCCTTGTTCAAAGTAGATGTGATGTCTGGAAATATTGGCTATTTGAGATTCGACATGATGGAAGACATAAAGGTTCTGCAAGCAATTAATCCCGAGTTCCTCAAAGTCGTATGGAACAAGCTGGTGAACACAGACATGCTCATAATTGACGTGAGATATAACACCGGCGGATACTCTACAGCTATTCCTCTACTTTGCACCTATTTTTTTGATGCACAACCGCTGACACACATTTACACCCTTTTTGACCGCTCCACAGCAACTGTGACCAAAGTTACGACTCTTCCAGATGTGCTTGGACAGAAGTACAGCTCTCAGAAAGATGtttatattttgacaagtcaCATAACTGGATCAGCCGCTGAGGCATTTACTAGAACAATGAAAGACCTGAAAAGGGCCACTGTAATCGGAGAGCCCACAATTGGAGGTGCTCTCTCGAGTGGAACTTACCAAATCGGGAATAGCATCCTTTATGCTTCGATTCCCAAtcaggcagttctgaatgcagtTACTGGAAAACCATGGAGCATTTCAGGAGTTGAACCACATATAGTAGCTCAAGCAAGTGATGCACTTATTGTTGCACAGAAAATCATAGCCactaaacaacaaaagaaaaactcaGGAAAATAG

Function

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0006508 proteolysis biological_process
GO:0005501 retinoid binding molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070301-4 Predicted to enable serine-type peptidase activity. Predicted to act upstream of or within proteolysis. Is expressed in eye; pineal complex; and retinal inner nuclear layer.

Ensembl:

ensembl_id ENSDART00000152235

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010716 lncRNA upstream 53701 2578020 ~ 2607032 (+) False XLOC_004450
TCONS_00008921 lncRNA upstream 53701 2578020 ~ 2607032 (+) True XLOC_004450
TCONS_00010715 lncRNA upstream 656573 1966673 ~ 2004160 (+) True XLOC_004444
TCONS_00010864 lncRNA upstream 1454538 1187493 ~ 1206195 (+) True XLOC_004438
TCONS_00010863 lncRNA upstream 1582553 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00010865 lncRNA downstream 106094 2769565 ~ 2772390 (+) False XLOC_004456
TCONS_00010866 lncRNA downstream 106118 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00010867 lncRNA downstream 106120 2769591 ~ 2772390 (+) False XLOC_004456
TCONS_00010868 lncRNA downstream 106129 2769600 ~ 2772390 (+) False XLOC_004456
TCONS_00010869 lncRNA downstream 106155 2769626 ~ 2772390 (+) True XLOC_004456
TCONS_00008923 mRNA upstream 9457 2648043 ~ 2651276 (+) True XLOC_004452
TCONS_00008922 mRNA upstream 15093 2631711 ~ 2645640 (+) True XLOC_004451
TCONS_00008920 mRNA upstream 92273 2522642 ~ 2568460 (+) True XLOC_004449
TCONS_00008918 mRNA upstream 168263 2446837 ~ 2492470 (+) False XLOC_004448
TCONS_00008919 mRNA upstream 176923 2455429 ~ 2483810 (+) True XLOC_004448
TCONS_00008925 mRNA downstream 1610 2665081 ~ 2670156 (+) True XLOC_004454
TCONS_00008926 mRNA downstream 13407 2676878 ~ 2728224 (+) False XLOC_004455
TCONS_00008927 mRNA downstream 13832 2677303 ~ 2744646 (+) True XLOC_004455
TCONS_00008928 mRNA downstream 141034 2804505 ~ 2848288 (+) True XLOC_004457
TCONS_00008929 mRNA downstream 207200 2870671 ~ 2895802 (+) True XLOC_004458
TCONS_00008894 other upstream 2138911 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 1833893 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 2388091 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 2388972 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 2393750 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 2398096 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_06058032_06060776.mRNA True 2963 mRNA 0.45 1 CI01000047 6058032 ~ 6060994 (+)