RNA id: TCONS_00010868


Basic Information

Item Value
RNA id TCONS_00010868
length 2192
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_004456
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2769565 ~ 2772390 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTTAAGATTTCAGCCTGTATTTAAGATACAGCATGTACACAAATATGCATCATGTAAATACAAGCTTTTATCGTGGATGCGAtaatcattcaattattcattcagagccgatgctcttccagctgcaacccagtactgggaaacagtactacatacacactcatacactatggtcaatttagttaatcaattctctATGGGAGTAACCGGaacacctagaggaaacccacgccaactcggggagaacatgcaaactccacacagaaatgccaactggtccagctgggattcgacgcagcaaccttcttgctgtgaggtgacagtgctaaccactgagccaccacgctGCCCAACTGACAATTACAATACACAAATTCAATCTCAGCCATGATGTCttgtctcaatttttttttttatcagttcagACTTTTTAATctcaaatttaaaatgacatctcaTAACATGTTTCAAGATTCATGTGAAGGAAATGGCCTTCCATATACAGTCTGTGATTTGAAAAGCTAATCGTCTAAAGAAAAGTCTCTtgaaagtgtccaaacacagacagctgaaaacaATCCGCATGTATGGCTTCTATAGCAGCTTCCTCAGTCGAATCCGGAAACTTCAAGTCTTGAGACGAAACTGAATCCATATTTTACATACAACACTTACATTCAAACAAAGATAACAAACAGTATATCAAGAAAAACACCTGAACTGAAACAGTAAGAATGCAGAATTACAGTCTCAAACCTTTTGATTTGATTGAGAAACAAAATGATTGCAGAAATAATAACAGCAAAAGTTCCTCATTCCGGTCTTAAAACATTGTGATGATCAGCATTTtgcgaaatgtaaaatatgttgctccGCATACATCTCATTGCACGTTTCGGATGACAAATCCAGTGGAGGGCGCTCTCTTCATCTTTGCAAATTTAAAATACGTTACtcagggtacgttttgttgcatgtttcagatgacaaatccactagagggcgccctttttatttttgttaatctgAAATGCAGTACTTAGGAtacgttttgttgcacatttcagatgacaaatgtCAATCAAACATAAAATGCACTAGGTAATCTAAAAAAACACTAGGTGGTGCTCTGtatatttttgtgaatctgaaatgcgttacttaTGGTACCTTTTGTTTACATaccagatgacaaatccactagagagcaCTCTCTTCatatttgtgaatctgaaattcGTAACTTTTGGTTCATTATTTGTAcgtttcagatttaaaaaaaccTACTACTAAAcattttttgcgaatctgaaatacgttacttttGGTGCCTTTtcttgcacatttcagatgacaaatccacttaaGGATGCTCTCTTCATTATTGTCAAGCTAACATACGTAAGTTTTggtatattatttgtatttttcagataaaaattccactagagggtgctgtgtgGATTTTTGCAAATCTGTAATATGTTACTTTtagtacattttgttgcatgtttcagatgacaaatccactagagggcgccctttttatttttgttaatctgAAATGCAGTACTGAGgatacattttgttgcacatgtCAGATGACAAATCTGAATTGTTAATCAAACATAAAATGCACTagctaatctaaaaaaaaacactaggtGGTGCTCTGtatatttttgtgaatctgaaatgcgttacttaTGGTACATTTTGTTTAAGTaccagatgacaaatccactagagagcaCTCTCTTTATATTTGTGAATCTGAAAGTCGTAACTTTTGGTACATTATTTGTACATTTCAGATTTAAAACCATCTACTAAAGGGTGCTGTAAACATTTTTGccaatctgaaatacgttacttttGGTGCCTTTtgctgcacatttcagatgacagatCCACATGAGGATGCTCTCTTCATTTTTGTCAATCTAACATACGTAAGTTTTGgtatattatttgtaaatttcAGATAAAAATTCTACTAGATGGTGCTGTTaattttttgtgaatctgaaatacgttatttttggtacattttttgtatattttagatgaaaaatccataagagggcgctgtttacatttttgcgaatctgaaatacgttacttaggccatattttgttgtacgtttcagaaaCCCATCCGTGTATATATACACCAGAAGGGCTtgtcat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010716 lncRNA upstream 162568 2578020 ~ 2607032 (+) False XLOC_004450
TCONS_00008921 lncRNA upstream 162568 2578020 ~ 2607032 (+) True XLOC_004450
TCONS_00010715 lncRNA upstream 765440 1966673 ~ 2004160 (+) True XLOC_004444
TCONS_00010864 lncRNA upstream 1563405 1187493 ~ 1206195 (+) True XLOC_004438
TCONS_00010863 lncRNA upstream 1691420 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00010870 lncRNA downstream 223497 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008935 lncRNA downstream 231580 3003970 ~ 3008922 (+) True XLOC_004459
TCONS_00010871 lncRNA downstream 1213689 3986079 ~ 3991423 (+) False XLOC_004469
TCONS_00010872 lncRNA downstream 1213704 3986094 ~ 3991423 (+) False XLOC_004469
TCONS_00010873 lncRNA downstream 1213801 3986191 ~ 3991423 (+) False XLOC_004469
TCONS_00008927 mRNA upstream 24954 2677303 ~ 2744646 (+) True XLOC_004455
TCONS_00008926 mRNA upstream 41376 2676878 ~ 2728224 (+) False XLOC_004455
TCONS_00008925 mRNA upstream 99444 2665081 ~ 2670156 (+) True XLOC_004454
TCONS_00008924 mRNA upstream 106129 2660733 ~ 2663471 (+) True XLOC_004453
TCONS_00008923 mRNA upstream 118324 2648043 ~ 2651276 (+) True XLOC_004452
TCONS_00008928 mRNA downstream 32115 2804505 ~ 2848288 (+) True XLOC_004457
TCONS_00008929 mRNA downstream 98281 2870671 ~ 2895802 (+) True XLOC_004458
TCONS_00008930 mRNA downstream 221133 2993523 ~ 3019847 (+) False XLOC_004459
TCONS_00008934 mRNA downstream 223497 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008933 mRNA downstream 223497 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008894 other upstream 2247778 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 1724974 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 2279172 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 2280053 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 2284831 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 2289177 5061567 ~ 5061697 (+) True XLOC_004495