RNA id: TCONS_00008927


Basic Information

Item Value
RNA id TCONS_00008927
length 6703
RNA type mRNA
GC content 0.42
exon number 18
gene id XLOC_004455
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2676878 ~ 2744646 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTGCCAGCTCTCAGCCTGGGCTCTTTTCTCAAACGACTCCGTCTTTGCTGTGCACATTTACACCAAATGCCAAGCGCTTGAACAAAACACACATCTGGCTCTTTTTACACGTGGATTTTTCCTGCAGCAACAAGTTCTTCACAATTCCCCAAAACAACAAACCGGCGAGTGTTTTATAGCGTAAAGAAAACTAAACAGACACTTGGAgttttttaaacttgtttttttttcaccctgGACGTCGGCTTTGTATTCAGTACACATTGGAAATAGTTGTATTTATCATCATCCCGTTTGGACTTCAGACTGATGTGTGAGTAAAGACTGCGTCAACATCCGCTAAACTTCTCTTCTTTGTGTGCATCCTTCCCTCAGGATCTCTGAAAAGGCTCTTCTTTCAAGGCTCGACTTTGGGGATAATGTAAATAGCCGTTTCCAAACTAAGGATTGATGTTTTTGCAATAAGAAAGCAATGGCACGTTCGGTAGTAAAATTGTGTCTAGTCGTATTTTTCTTTGGACTTTTGTTGTTCACGCTTCCATCCGCGAGAGCCGAAGAAGATGTGGAGGAGGAGAGATCATGTCAGGGCGCTTTTGACTTGTATTTCGTCCTTGACAAGTCAGGAAGTGTCAAACATCACTGGCAAGAAATCTACTCGTTTGTTGAACTTTTGGAACAGAAATTCATCAGCCCGATGCTGCGAATGTCCTTCATCGTGTTCTCGACCAGAGGAAACACGATCATGAGACTCACAGAAAACAGGGAGACCATAAGAAAAGGCCTTAACGTTCTGCGGCGTGAGATTCCTGGCGGAGATACGTTTATGCATCTTGGTCTAGAAAAGGCAAATGAGCAAATATACCAGGAGAACTATGGAACTGCTAGTGTCATAATAGCATTGACAGACGGTGAGCTTCAAGAACATCAGCTGATAGCAGCTCAACAAGAgGCTGCACGAGCTCGGACACTGGGTGCAATCGTGTATTGTGTTGGAGTGAAGGACTTCAACGAAACACAGCTGGCGACTATAGCAGACACCAGTAAACACGTGTTTCCAGTTTTGGGAGGATTCCAGGCTCTGAGAGGAATGATCGACTCGATCATTAAGAAATCCTGCATAGAGATTTTGGCAGCGGAGCCATCCAGCGTATGTGCAGGAgAGTCGTTTCAGGTGGTGGTGAGAGGAAACGGCTTTCGGCACGCCAGAAACATCGACCAGGTCTTGTGCAGCTTCAAAATCAACGACACAGTCACTCTCAATGAGAAGCCGGCGAGTGTTGAAGACACGTTCCTGCTGTGTCCTGCGCCTGTTATAGATGAAGTCGGAAAGGTGGTTTACCTGCAGGTCAGCATGAACGAGGGTCTGTCTTTCATCACCAGCTCCGTTCACATCACCACCACTGAGTGTTTTGACGGGACGATTCTCCTGATCACGCTGCTGGTGTTGTTCCTCTTGTTGGCTCTGCTCTTTATGTGGTGGTTTTGGCCGCTCTGCTGCACTGTAGTGATTAAAgagcctccacctcctcctcctccagaaCCTGAATCTGATGATGAAGACGGGATGCCCAAGAAGAAATGGCCCACAGTGGACGCTTCATATTACGGCGGTCGAGGAGTCGGGGGAATTAAACGAATGGAGGTTCGCTGGGGAGGCAAAGGCTCCACCGAGGAGGGAGCGAAGCTGGAGAAACCCAAAAACGCCGTCATAAAGATGCCGGAGCAGGAGTTTGAACCCTTTGAACCCAAGCCCAGAAAATCAGACCACAGGAAGCCGACTCAGAACAGGAAGTGGTACTCGCCCATCAGGGGTAAACTGGATGCCATCTTGGCTCTTTTCCGCCGTGGATATGATCAGGTTTCACTCATGAGGCCGCAGCCAGGAGATCATGGTCGGTGTATCAACTTTACACGAGTGAAAGAAGAAGCAGCCAAAGCTCAGAGTCCTCCTCCACCTCCACCAGACTACCAGCAGGTTGCCAGTCCCATCACAACACCTCCAAACAGCCCGCCTCCGAGAGGACCACCGCTTCCCCAGCCTCCACCCGGCCCACCGCCCGCCCGCCTGCCACCCGGACCACCTGGACCCCCTCCAGCACGTGCGCCGCCCAGCCTCGACAGCAGACCCTGAGACTCATCCAGCCTCCAGCACCACCCAGAATAAAAAAACATGGTATTTATGGGCCAGGTTCCATTAGGAAGTGGAGTGTAGTTTGTTGCTGGACAGCAAAAACAAATGTacgaaaacaaaaagaaatgttgTGACAAAAAATTCAACTACTGAGTTTTCCATTTCCATAGTGCTCCcttttttctctttcattttatATCAAGGCTGCACAAATTATGGTAATTATTCTGGCTGCATTCATTTGCAAAGCTTCCAGAATCTTGCAGAAAATGTCCAAAATGAGCAGTGGTAGGTGCGTCGATAATATTGTACAGCATCtttgatttactttttattttattttgatcagaatcattgcaacacaggctcattctgaaaacgttgctctatatatatttctggagattgtgaattatgtagccagaggtacgtatggctgcatttcatctttaaaatgaatgctacggggcggctgttccttttcgcgcttaatAGCTGACCGCTTACCACTGTGTGGACGACTTTCTGGCTGTTGCTAgattgtccagttagctcaccatgtgcataggtggacttgagatgcagagagaagaTGACCACAATGACGGGGTTTGAGTACGGTGAAGAACGATGgataaggaaaaaaaaaggaagccatatatatatatatatatatataaaatagagtGTAAATGTGGTAAAACGTGGGAAAAAAAATCAGGCGAGGCCTTTGCTTTTTCTGAATTGCTATTTAAATTTGtcgctgggtttagggaagtggatgggtgggtcagtctgtgcttttgaaaacactattggttgggtttaggaaagggtgggtcagtcgatcgctcagtcaaacagtcagtcgacagcggcctctggtggatttacgagagaacagcaggtgGGAATGGCATtcccgagagaaatttgagatctcgaaaagtatacacagcggcctctggtggatttgcgaaaacaaaaactgcaaaaaaatgtagctcccgggacgtatttgccgctctccagaaatgtatacaggggtacataatcagaatgagcctgggttgaatcaTTGTGTCGAGTGACAGATTTACAGTTGCAGGTTTTCTCAGGTGAGTCTCTGACCCTGTATGAAGGTCCAATGTGACCAAAGAGGACAGAAACAAATAAATCACAGCATGATGTTGGATGAACGCAAGTGATGAATGTGTAAAGGCATTTCTTTTATTGTGGATTTGCAACTAACGTCTTAGTATGTCACAAGTTCCTTCGTTTACGTATATCCCATGAGCAGGATTTGTCTCGAATCACTCGATTGCTGAATTTCGACAGATTTTCGTAGGTGCTTAAAGTTGGATACTAGAATGGCTTTGAATTTACTTATAGATTTACATATTACAAAAACATGTCCTGTACACACTTCATCTCAAAATTAAAAGGGTCACACTTTAAGGTTCCATTAGTTCagcgtttctcaaccacgttcgtGGAGGAACACCAGCTCTGAACAATAATCATGtccccttaaccaaacacacctgattcagatcatcagctcattagcagagactgaaagacctgtaatgggtgcgacaaaggagacatccaatcaacataggctcattctgaaaacgtagccctgtatacgtttctggaggtcgcgaattatgtatccagaggtacgtgtggctgcatttagacttgagacgcagagaagagCTGACCGCGACACCAGGGTTTGAGTCCGATGAAGAGcgtttccagaaagcaggtaaaacaaaagcccataaataaaataaacaagtaaataacagggtgagaatgaggtaaaatcagaaaatgtggtaaaaatcaggcggcttttctttttctggattgtttttcgaaacactattggttggattttggaaagtgggtgggtgctggtcagtcggtgctttttaaaacactatcagttaAGACTAGGGAAAGGGGTGAGTGGTGgtgtcagtcgatcagtcagtcagttgacagcgtcctctggtggatttacgcaagaacagcaggcgctcGCGAGAGATATCATGAGTTCTGAAAAAGCCTACACAGCAGCCTGTGGTGAATTCGTgaaaaccaaaactgcaaaaaatgtagctcctgggacgtatttggcgctctccagaaatgtttataggggtACGTTTCAGAGCGAGCCTGGGTtgcatccaaaacatgcagtgttggtgggcctccaagaacgtggttgagaaacactacattagctaatgttattgaatgtatttattgacatgaaccaacaatgaacaagcatttattaatgcataATTCAAGCTTtgtcattaactaatgttaccaaagattaataaatacagtaataaatacataaattaatgaattacatgaacaaaacttttacaaaaaaaatcaatataaatacatatattttgtataaaGACAATGAACCCTGTTTAAATGACCATTAAGATTGTTCATTGTTGCTTTTTTTCTAGTAACAAATGTCTCATTACTGTAATGCATCGAGATTATTATTCTGTAAATACCATTATTTTTAATGGTGTTTTTTGCTAGATTGTCATCCTTGTAATCTGAACGACTAAATCGTTGGCAATGAAATGTAATAACAGAGCGAGTTTAATACAAAGTGTTTTCATTGatatttattgtttacaaataCAAAGCTGTAATACACTACAAAAATGGCATATTACATACCTGATAATCTAGTACACATTTTTTTAGCAATAtgtaacaatgtttttatttatatcagcCTAACGCAAATATTACACGTAATTAAACTcttgttattaaaatattgcatTACAGTAATGAGAATAACTACAATGTTCCTACAAAtaggtttatttttctttaaaggtGGCCTGTTTAGGCCtgttacaagatgtaaaataagtctctgatgttccaAGAGTGTGTATgtcaagtttcagctcaaaatagcacacaaataatattttataaatctcTGAAATGACCACTTTTGGGCTTTAATCCTAATAgtgttgttttggtgactgtctctttaaattcaaatgagattgaacACTTTTCAGAAGagggggcggagctacaaatgcctgtgtgtcagcatagtggcggATTTAAtaacaagactaacatcctatgctaatgagggagagattgtcactagtgggccgggctttcccactctgatgacacgtacaaagagagaatgtcaattgaagtgtttctgcagactgttttaatcaagtgcgattataaaaaatagaattattaaatgtttaccaTTCGAgcctggttatattcacacactgatgtcccctttaaagagcacctatgatgagAATCATATTTTGTAAGCcacgtgtgtgtgcgtgaactttgtaacgacatcgtgtgtgactcattgttgcagaaaggcttgaattaactcaacaaacaaatacaacaaataatcattgggaaagttcttactgtagtatttctctcaAACGTTATGTGaggtctgcttccttcatgtctgtcggttatctgatgcagccgagggTGGAGATTgagacacactctgacaggcatgtgggaactgTGGGCAGAGAGAACCAACATTAAAGGTACAGGCCACGAAAACAGCGACTTggttgttcagagcagaaaatccaacaTTCTGAAAAGCgctaataaataatctaatgggtgttttgagctgaaactttacagacacgttCTGGAGACATGagagacttatattaaatcttgaaaaatgggaaaaataggtcccctttaggttatttttaatgttttctgtCTTATGATTCAGGAATGTACTTGGCAGGTTTATTGGGATCAAGTTTGTTTATTGTAAAGGTTGAACCTCTAAATGCAAAGTCCGGTCAGTTCTCTGTATTCCGCAACTATACTGTACGTATGTTGATATTCATCGTGTTTCCTTAGCATTTCCTCATCAAACATAAACATATTGCAACTGCAGGGCAGTTCACAGCATTTAATTTATTATCCCCACGCCTGAAGGAAGGTACTTGAATACGACAAGGTGTCAAACCAGGACACTGTGCATGAaaccaaaaacattaaaatgaaaaaaaaaagataatcattTAGCCTCAGATAACAGCCAGTGCcttcagtgtgtttgtttttgttacgtttaaactgtccttccttttATACATCATGATACAGTAGCACTGTATTTCCTAAAAGATGCATGATTTGGTTTCCTCAAAGAGAACAAGTGCTCAGCTGTGAACAAGCAAAAACTCCACGGTTTATTCAGATGAGATGTAACGCAAGCTATCTTACAGTATGAtgctatttagtttgttttattcgCTTGTGCCGACCATTTGAAACATTGTGACCTGTACTATTCCACACCAAAACGTTGATACCAGAGTtataaatcacaattattttgtgtTATGATGTAGTTCGTGTATTAACAGCGATACTGATGCATCTATTGAAAGGCTCATAAAGTTGACTTTTTTCACAGTATTAATAAAGGCCGATTTCAAGCTTT

Function

GO:

id name namespace
GO:1901998 toxin transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090514-5 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Is expressed in cranial vasculature; spinal cord; tail bud; and trunk vasculature. Human ortholog(s) of this gene implicated in GAPO syndrome and colorectal carcinoma. Orthologous to several human genes including ANTXRL (ANTXR like).

Ensembl:

ensembl_id ENSDART00000093113

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010716 lncRNA upstream 70271 2578020 ~ 2607032 (+) False XLOC_004450
TCONS_00008921 lncRNA upstream 70271 2578020 ~ 2607032 (+) True XLOC_004450
TCONS_00010715 lncRNA upstream 673143 1966673 ~ 2004160 (+) True XLOC_004444
TCONS_00010864 lncRNA upstream 1471108 1187493 ~ 1206195 (+) True XLOC_004438
TCONS_00010863 lncRNA upstream 1599123 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00010865 lncRNA downstream 24919 2769565 ~ 2772390 (+) False XLOC_004456
TCONS_00010866 lncRNA downstream 24943 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00010867 lncRNA downstream 24945 2769591 ~ 2772390 (+) False XLOC_004456
TCONS_00010868 lncRNA downstream 24954 2769600 ~ 2772390 (+) False XLOC_004456
TCONS_00010869 lncRNA downstream 24980 2769626 ~ 2772390 (+) True XLOC_004456
TCONS_00008925 mRNA upstream 7147 2665081 ~ 2670156 (+) True XLOC_004454
TCONS_00008924 mRNA upstream 13832 2660733 ~ 2663471 (+) True XLOC_004453
TCONS_00008923 mRNA upstream 26027 2648043 ~ 2651276 (+) True XLOC_004452
TCONS_00008922 mRNA upstream 31663 2631711 ~ 2645640 (+) True XLOC_004451
TCONS_00008920 mRNA upstream 108843 2522642 ~ 2568460 (+) True XLOC_004449
TCONS_00008928 mRNA downstream 59859 2804505 ~ 2848288 (+) True XLOC_004457
TCONS_00008929 mRNA downstream 126025 2870671 ~ 2895802 (+) True XLOC_004458
TCONS_00008930 mRNA downstream 248877 2993523 ~ 3019847 (+) False XLOC_004459
TCONS_00008934 mRNA downstream 251241 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008933 mRNA downstream 251241 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008894 other upstream 2155481 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 1752718 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 2306916 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 2307797 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 2312575 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 2316921 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_06086322_06106616.mRNA True 1592 mRNA 0.46 15 CI01000047 6086322 ~ 6106722 (+)