RNA id: TCONS_00008921


Basic Information

Item Value
RNA id TCONS_00008921
length 1482
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id XLOC_004450
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2578020 ~ 2607032 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATTCTCCTTCAGAAGTGCGGATGCTTCTCTGCCGTCCCGCTCAAGGAACACTTCCAGCAGTATCAGAGAAAATAGGCCAACTGACCTGCAGCTGAAGCATGACTGATCAAGTCAAAGGAGCATTTCAATGAAGGTCTTCTCCTGGGGGGACCGAACATCTCAGAGAAGTGCATCAGTGCATCATCCCAGAGCAGGACGGATCCTTCAGAAAGGGTTCTCTCAAGAACAGAAGGAGAGTCTGAAGTCTTAATGGCAACTGGTTTCTGCGCTTTACTGGACTTTTACAGGACTGGATGAAAAGAATCCCATAAGGACGAATGGACTTCTCCACAATCTCCCTCTCTTCACCAGGAGAGGTGCCATCAGGAATTGGAATCAGCCAGTAGTCCTTTCTGCCACACACTTGTCTCATCTCTGGATTGATCCTGTTCTGCATGATGACTCGTCAGAAAGACACTTCAGTGGCTCTTCTGTGTTCATGCCTGATCAAGCAGAACGATCCGGAGACGAGAAATGGGTTTAATGGACGAGGGAAAAAGAAgcttgtaaagaaaaaaaagactttatgaCTTGGACCGTCGGAATAACAAGACAAAGCAGAGGAAGAAAGACACTTTTACATGCTCAGGGTAAATCGTAATGAATCCTGCTAACAAGACTGTCTTTTGTCTGTTTATCAGTGACATGTTGAATATACTGAAAGGGCTTTATTATTACTGCTCCTATGGTAAACATGCCTATTGCTTACAGCTTCTTTAAGACCGTCTTGGATACTTCGGTCATTGAATTTTACAagaaagaaattatttaaagtttAGAATCATTTTTGggggggaactatccctttaaactgtccctttaagccaAGAGATGGAAATCTCCATGCTATTGGATTAAATAAGCATTTGCTGAAATTTCATCCAGTACAGTTGCCATATTGTTTCTCTTCTGATTCCCTGAGAGGGAAGTGACAACATGACAGATTGATTGGGGACAAATTCCTGCTTCTGCCTTGACAACTTCCCAGCGGGCCACTGTCTGCTTTGTGTTGGCAACAGAGATCTTACTGTGATGATGATGGGCACGCACTTTCTGGACCATCACAGAACTGTTTAGAGAACCCAGAACCTTCAGCTTCATCATGTGTGGAGAACACTATAGTACGTCCAAACATGTTCAACTCTGGCATCATTTCCTCACCACATCATTCCAAATCCATATTCATATTCAACTCCGAAAAGAACAAAGGCAACGTGAAAGTTTAAGTCATGCAAAAGCTTTGTAGGAGGAAAATATCAACATATGAtgttaacaaacacacacaggagcCACGTAGGGCTAGTAATCATTTaaactggttaaataatgatgtaatgtgaaacaggtgatgtccACAGATGATtgcaattatgatttggtacaaaagcagcatccaagaaaggtgtagtcctttaggagcaaagatgggcagagaaTCACC

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0009314 response to radiation biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0007603 phototransduction, visible light biological_process
GO:0009416 response to light stimulus biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0005929 cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0016020 membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010715 lncRNA upstream 573860 1966673 ~ 2004160 (+) True XLOC_004444
TCONS_00010864 lncRNA upstream 1371825 1187493 ~ 1206195 (+) True XLOC_004438
TCONS_00010863 lncRNA upstream 1499840 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00010862 lncRNA upstream 1674368 902588 ~ 903652 (+) True XLOC_004434
TCONS_00010861 lncRNA upstream 1682377 892180 ~ 895643 (+) True XLOC_004433
TCONS_00010865 lncRNA downstream 162533 2769565 ~ 2772390 (+) False XLOC_004456
TCONS_00010866 lncRNA downstream 162557 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00010867 lncRNA downstream 162559 2769591 ~ 2772390 (+) False XLOC_004456
TCONS_00010868 lncRNA downstream 162568 2769600 ~ 2772390 (+) False XLOC_004456
TCONS_00010869 lncRNA downstream 162594 2769626 ~ 2772390 (+) True XLOC_004456
TCONS_00008920 mRNA upstream 9560 2522642 ~ 2568460 (+) True XLOC_004449
TCONS_00008918 mRNA upstream 85550 2446837 ~ 2492470 (+) False XLOC_004448
TCONS_00008919 mRNA upstream 94210 2455429 ~ 2483810 (+) True XLOC_004448
TCONS_00008917 mRNA upstream 147438 2428247 ~ 2430582 (+) True XLOC_004447
TCONS_00008916 mRNA upstream 156350 2399130 ~ 2421670 (+) True XLOC_004446
TCONS_00008922 mRNA downstream 24679 2631711 ~ 2645640 (+) True XLOC_004451
TCONS_00008923 mRNA downstream 41011 2648043 ~ 2651276 (+) True XLOC_004452
TCONS_00008924 mRNA downstream 53701 2660733 ~ 2663471 (+) True XLOC_004453
TCONS_00008925 mRNA downstream 58049 2665081 ~ 2670156 (+) True XLOC_004454
TCONS_00008926 mRNA downstream 69846 2676878 ~ 2728224 (+) False XLOC_004455
TCONS_00008894 other upstream 2056198 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 1890332 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 2444530 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 2445411 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 2450189 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 2454535 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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