RNA id: TCONS_00008919


Basic Information

Item Value
RNA id TCONS_00008919
length 840
RNA type mRNA
GC content 0.53
exon number 6
gene id XLOC_004448
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2446837 ~ 2492470 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agaaaaccaACGCTTCATCCCTCCACTCGCAGATTTGCGTCCAAGAGCATGGTGATGGGAGAGGCATCCCGAGGCTCATGCCGGCCCACCTCACCGAGTCTCCAGGAGGGGGTGCTAAAGGCCGGCTGGTTGAAAAAGCAGAGGAGCATCATGAAGAACTGGCAACTGCGCTGGTTTGTGCTGCGTGCCGACCATCTCTTCTTCTACAAGGACGAGGAGGAGACCAAACCACAGGGCTGCATCTCACTGAAGGGCAGCCAAGTCAATGAGCTGACGGCAAACCCAGAAGAACCCGGACGACACCTTTTTGAGATCCTGCCAGCTGGGGAGAAAGACAAGGCTGCCATGAGCCACGAGTCCTTTCTACTGATGGCAAACACTCAGAGTGACATGGACGACTGGGTGAAGGCCATCAGGCGGGTCATTTGGGCTCCTTTTGGAGGAGGTATATTTGGGCAGCGTTTGGAAGACACCGTACAGTATGAGAGAAAGTTTGGTCCTCGACTGGCCCCTCTCTTAGTGGAGCAGTGTGTGGATTTCATCAGAGAACAGGGCCTTGATGAAGAAGGACTTTTCCGGATGCCAGGACAAGCCAACCTGGTGAAGGAGCTCCAGGAGGCCTTCGACTGCGGAGATAAACCTCAGTTTgacagTAACACTGACGTCCACACTGTGGCTTCCCTGCTGAAGCTGTATCTCAGGGAGCTTCCAGAACCAGTGGTTCCCTTCTGCAAATATGAAGATTTCCTCACCTGCGCTCAGCTCCTGACCAAAGATGAGGAGGAGGTTAGTGAACACATGACATTCAAAACACTTGAGGATAcactaaaaaaagtgtaa

Function

GO:

id name namespace
GO:0099175 regulation of postsynapse organization biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0098978 glutamatergic synapse cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-87 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity. Predicted to act upstream of or within signal transduction. Orthologous to human ARHGAP22 (Rho GTPase activating protein 22).

Ensembl:

ensembl_id ENSDART00000182929

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010715 lncRNA upstream 451269 1966673 ~ 2004160 (+) True XLOC_004444
TCONS_00010864 lncRNA upstream 1249234 1187493 ~ 1206195 (+) True XLOC_004438
TCONS_00010863 lncRNA upstream 1377249 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00010862 lncRNA upstream 1551777 902588 ~ 903652 (+) True XLOC_004434
TCONS_00010861 lncRNA upstream 1559786 892180 ~ 895643 (+) True XLOC_004433
TCONS_00010716 lncRNA downstream 94210 2578020 ~ 2607032 (+) False XLOC_004450
TCONS_00008921 lncRNA downstream 94210 2578020 ~ 2607032 (+) True XLOC_004450
TCONS_00010865 lncRNA downstream 285755 2769565 ~ 2772390 (+) False XLOC_004456
TCONS_00010866 lncRNA downstream 285779 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00010867 lncRNA downstream 285781 2769591 ~ 2772390 (+) False XLOC_004456
TCONS_00008917 mRNA upstream 24847 2428247 ~ 2430582 (+) True XLOC_004447
TCONS_00008916 mRNA upstream 33759 2399130 ~ 2421670 (+) True XLOC_004446
TCONS_00008915 mRNA upstream 54195 2381213 ~ 2401234 (+) True XLOC_004445
TCONS_00008912 mRNA upstream 713648 1592146 ~ 1741781 (+) False XLOC_004443
TCONS_00008920 mRNA downstream 38832 2522642 ~ 2568460 (+) True XLOC_004449
TCONS_00008922 mRNA downstream 147901 2631711 ~ 2645640 (+) True XLOC_004451
TCONS_00008923 mRNA downstream 164233 2648043 ~ 2651276 (+) True XLOC_004452
TCONS_00008924 mRNA downstream 176923 2660733 ~ 2663471 (+) True XLOC_004453
TCONS_00008925 mRNA downstream 181271 2665081 ~ 2670156 (+) True XLOC_004454
TCONS_00008894 other upstream 1933607 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 2013554 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 2567752 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 2568633 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 2573411 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 2577757 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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