RNA id: TCONS_00008915


Basic Information

Item Value
RNA id TCONS_00008915
length 339
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_004445
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2381213 ~ 2401234 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGCTGGCCTGGGCATcaacatctcaagacatcagccaggaaattaaaacttgaccatgacactaagcacactgccaaattatggcttcacaacaacttggtgaatgtccctgagtggcccagccagagcccagacctaaatcctattgaacatctctggagagatctgaaaatggctgtacaccggcgcttcccatccaaccagatagagcttgagaggtcctgcaaagaggaatgggggaaaattcccaaagacaggtgtgccaagcttgtggcatcatattcaaaaagacttgaggctgtaatcgctgccaaaggtgcatcaacaaagtactga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000188007

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010715 lncRNA upstream 377053 1966673 ~ 2004160 (+) True XLOC_004444
TCONS_00010864 lncRNA upstream 1175018 1187493 ~ 1206195 (+) True XLOC_004438
TCONS_00010863 lncRNA upstream 1303033 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00010862 lncRNA upstream 1477561 902588 ~ 903652 (+) True XLOC_004434
TCONS_00010860 lncRNA upstream 1485570 892178 ~ 895643 (+) False XLOC_004433
TCONS_00010716 lncRNA downstream 176786 2578020 ~ 2607032 (+) False XLOC_004450
TCONS_00008921 lncRNA downstream 176786 2578020 ~ 2607032 (+) True XLOC_004450
TCONS_00010865 lncRNA downstream 368331 2769565 ~ 2772390 (+) False XLOC_004456
TCONS_00010866 lncRNA downstream 368355 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00010867 lncRNA downstream 368357 2769591 ~ 2772390 (+) False XLOC_004456
TCONS_00008913 mRNA upstream 639432 1592146 ~ 1741781 (+) False XLOC_004443
TCONS_00008912 mRNA upstream 639432 1592146 ~ 1741781 (+) False XLOC_004443
TCONS_00008914 mRNA upstream 639432 1609563 ~ 1741781 (+) True XLOC_004443
TCONS_00008911 mRNA upstream 855162 1492641 ~ 1526051 (+) True XLOC_004442
TCONS_00008910 mRNA upstream 855170 1469327 ~ 1526043 (+) False XLOC_004442
TCONS_00008917 mRNA downstream 27013 2428247 ~ 2430582 (+) True XLOC_004447
TCONS_00008918 mRNA downstream 45603 2446837 ~ 2492470 (+) False XLOC_004448
TCONS_00008919 mRNA downstream 54195 2455429 ~ 2483810 (+) True XLOC_004448
TCONS_00008920 mRNA downstream 121408 2522642 ~ 2568460 (+) True XLOC_004449
TCONS_00008922 mRNA downstream 230477 2631711 ~ 2645640 (+) True XLOC_004451
TCONS_00008894 other upstream 1859391 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 2096130 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 2650328 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 2651209 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 2655987 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 2660333 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU384293 True 361 lncRNA 0.46 1 NC_048568.1 28656192 ~ 28656552 (+)