RNA id: TCONS_00008910


Basic Information

Item Value
RNA id TCONS_00008910
length 3430
RNA type mRNA
GC content 0.48
exon number 14
gene id XLOC_004442
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1469090 ~ 1526051 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTCTGTCATGAGTCCGGCCGGGTGCTCCCATGTGAACGGCTTCAAAGTGGACAACTGGAAGCAGAATCTGCGGGTCATCTACCAGTGCTTTGTGTGGAGCGGATCTGCCGAAACCAGGAAACGCAAGGCGAAGTCATGTATATGTCACATGTGTGGAGCTCATCTAAATCGGCTGCACTCGTGTCTTCACTGTGTGTTCTTCGGCTGTTTCAGCAAGAAACACATCCACGAACACGCCAAAAACAAGAGACACAACCTAGctataGACCTTTTGTATGGTGGAATATATTGCTTTGTGTGCCAAGACTACATATACGACAAAGACATGGAGCAGATTGCCAAAGAAGAACAAAGAAAAGCGTGGAAATTgcaagGTATTGGAGAGAAATATTCAATGTGGGAACCAACGAAAcgagagctggagctgctgcgaCACAATCCCAAACGGAGGAAAATCACAGCCAACTGCACCATAGgactgCGTGGTTTGATAAACCTGGGCAACACGTGCTTTATGAACTGCATCGTTCAGGCTCTCACACACACTCCGCTGCTGAGGGACTTCTTTCTGTCCGACAGACACAAGTGTGAGATGCAGTCCAACTCCTGCCTCGTGTGTGAGATGTCTCAACTCTTTCAGGAGtttTACTCGGGTCACCGCTCTCCGCACATTCCCTTCCGGCTGCTACATCTAGTGTGGACTCACGCCCGACACCTGGCCGGATACGAGCAGCAGGACGCGCACGAGTTCCTCATCGCCGCGCTCGACGTGCTGCACAGACACTGCAAAGATGACAATGGGAAAAAAGCCAACAACCCAAACCACTGCAACTGCATCATTGACCAAATCTTCACTGGAGGCCTGCAGTCTGACGTCACCTGCCAAGTCTGCCACGGCGTCTCCACCACGATAGACCCATTCTGGGACATCAGCCTGGACCTGCCGGGCTCCTCCACCCCGTTCTGGCCGCTCAGTCCCGGCAGTGATGGCAGTGTGGTGAACGGAGACAGCCACCCGAGCGGAGCCACCACGCTCACAGACTGCCTGCGCAGGTTCACCAGACCCGAACACTTAGGAAGCAGCGCCAAGATAAAATGCAGCGGTTGCCATAGTTACCAGGAGTCCACCAAACAGCTGACGATGAAGAGGCTTCCTATAGTGGCCTGCTTTCACCTCAAAcGGTTTGAGCACTCGGCGAAACTGCGGAGGAAGATCACCACATACGTGTCCTTTCCTCTGGAGCTCGACATGACGCCCTTTATGGCATCAAGTAAAGAGAGCCGAATGAACGGACAGTACCAGCAGCCAGTAGACTCATTAAACAATGATAACAAGTATTCTCTGTTTGCGGTGGTCAATCATCAGGGCACGTTGGAAAGCGGCCACTACACCACATTCATCCGGCAGCACAAGGACCAGTGGTTTAAATGTGATGACGCCATTATCACTAAAGCCAGCATTAAAGATGTTCTGGATAGCGAGGGGTACTTGTTATTTTACCATAAACAGTTCCTTGAATATGAATAATGGAGGATCCAGACGCGACTGAGTCCAAGCTGTGAAGGGATGAAAAGATGATCTGAGCGAAGGAGGGATGAAAACGCTGTAAATCCTCCACTCGAGAGCGGGCAGACCCCAGAGCCTTCTCACAAACCATGAAAACAAGACATCAAATCAttcaagaaaagaaagaaagaaagaaagcgtACACGGCTAAACCAATCTGCACTGAGCATCCGGAGCATACTTGacggaaggaggaggaggaggaggaggaggagaaaagcAGCCTCCACCTTTACTACAGAAACACAGACAGACTGACATCACTCTCCCACTCACTTCTGCTGCCCCGCTCTCATGAAGTACATGAGGGAAAAGCGATTCCTTTTTTATTTCTTGGTATGCATTATTGATGTACTGAATGCAAAAGAAAGGTGTTATTGACTTCAGCGTAAACCTATATTGTTGTTTGACGAAATACTGTCTGTGTCCAGCACTTTTAGTTTTCATTCAGACGAGCGTCGCAATcgttctgctctctctctctctctctctctctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctttcttgttTGGTCGAGGGCTGAAAtatatctctctcacacacacacacacacacacacacacacacacagatctatatataaatctatttttataagtcatttgttttttgttcacgTGTCCGATACCCGCATCTTTTTGTgttctgtgattggctgtgagtGCAGAGGAGAGTTTGTGCTTGATCTTTGCTTCCACTGGTTTGGATGTCGCTGCAGGTTTGGTTGCGAaggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgcacaTATGCATATCTGTGTGCGCACTCatgtgcgtgaatgtgtgtgtgtgtgtgagagattgtTTGTATGCAAGtctacgtgtgtgtgtgcatatatgcatattcatgcgcacacacacatttaagtgTGTCCACGGGTGTGCATATATGCATATCTTTGCAAAtacttaaatgtgtgtgtgtgtgtgtgtgtgtatgcgcatgAATATATGCAAATGTGTATGCActtgtgtgtttgcatgtatgcatatctttgtgtgtgcgtgcaagcATGTATGTACGTATGCGCACATTCATGTATGCATATTTGTGTACACACTAATTTGTCTGTGCGCGCACATGCATATctttgtacgtgtgtgtgtgtgtacgcaatCATATTTGCATATTCTTGTACACGTATGtggatgcgtgtgtgtgtgtgtgtgtgtatatatgcatatcCATGTACACACTcccatttttgtgtgtgtgtatgtatgtacgtatatgtatacatgtgtgcactaatatgtttgtttgtgtgtgtgcgtgtgtgtgggagAGTGCATGTAtacactcgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtacaTGTATGCATATCGCTGTACACacttatatatgtgtgtgctgttgattgagtgtatgtgtgtgagagagagtgtatgtgtgcgCATGCAGGTATGTGGccacctgtgtgtttgtgttgttagtgtgtgtgtgtgtgtgtgtactgaatCAGTACTCAAACTTGGCATGCCGTTTAAAGTGGATGCTAACAGACTTTGGGGAGgattttataaatgttaattatgtatctatgtatagtatgtatgtatgtaatgtatgtaaaacaaatcaattgaaaATGGTG

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0007049 cell cycle biological_process
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060512-211 Predicted to enable thiol-dependent deubiquitinase and zinc ion binding activity. Predicted to act upstream of or within chromatin organization; protein deubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 105. Orthologous to several human genes including USP22 (ubiquitin specific peptidase 22).

Ensembl:

ensembl_id ENSDART00000059143

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010864 lncRNA upstream 263132 1187493 ~ 1206195 (+) True XLOC_004438
TCONS_00010863 lncRNA upstream 391147 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00010862 lncRNA upstream 565675 902588 ~ 903652 (+) True XLOC_004434
TCONS_00010860 lncRNA upstream 573684 892178 ~ 895643 (+) False XLOC_004433
TCONS_00010715 lncRNA downstream 440630 1966673 ~ 2004160 (+) True XLOC_004444
TCONS_00010716 lncRNA downstream 1051977 2578020 ~ 2607032 (+) False XLOC_004450
TCONS_00008921 lncRNA downstream 1051977 2578020 ~ 2607032 (+) True XLOC_004450
TCONS_00010865 lncRNA downstream 1243522 2769565 ~ 2772390 (+) False XLOC_004456
TCONS_00010866 lncRNA downstream 1243546 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00008908 mRNA upstream 1412 1455147 ~ 1467915 (+) True XLOC_004441
TCONS_00008907 mRNA upstream 69318 1398404 ~ 1400009 (+) True XLOC_004440
TCONS_00008906 mRNA upstream 80883 1385192 ~ 1388444 (+) True XLOC_004439
TCONS_00008905 mRNA upstream 82645 1286642 ~ 1386682 (+) False XLOC_004439
TCONS_00008904 mRNA upstream 227762 1139690 ~ 1241565 (+) False XLOC_004438
TCONS_00008913 mRNA downstream 66103 1592146 ~ 1741781 (+) False XLOC_004443
TCONS_00008912 mRNA downstream 66103 1592146 ~ 1741781 (+) False XLOC_004443
TCONS_00008914 mRNA downstream 83520 1609563 ~ 1741781 (+) True XLOC_004443
TCONS_00008915 mRNA downstream 855170 2381213 ~ 2401234 (+) True XLOC_004445
TCONS_00008916 mRNA downstream 873087 2399130 ~ 2421670 (+) True XLOC_004446
TCONS_00008894 other upstream 947505 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 2971321 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 3525519 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 3526400 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 3531178 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 3535524 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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