RNA id: TCONS_00008908


Basic Information

Item Value
RNA id TCONS_00008908
length 1275
RNA type mRNA
GC content 0.41
exon number 18
gene id XLOC_004441
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1455147 ~ 1467915 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTTCAGCTTTGGAGCAGTTTGTCAACAATGTGCGGCAACTTTCCGCTCAAGGTCAGATGACTCAACTATGcgagttaataaataaaagtggggAGCTTCTGGCCAAGAATCTCTCTCATCTGGACACTGTTCTTGGCGCTCTGGACATCCAGGAACACTCCCTTGGGGTTTTAGCTGTTCTGTTTGTGAAGTTTTCCATGCCAAACATCCCCGATTTTGAGACCTTGTTTTCCCAAGTCCAGCTCTTCATCAGCACCTGTAATGGAGAACACATCCGATACGCCACAGACACGTTTGCTGGTCTGTGCCACCAGTTAACAAATGCCCTTGTAGAAAGAAAACAGCCCTTGCGTGGAATAAGTATACTTAAACAGGCCATAGACAAGATGCAGATGAACACAAACCAGCTTACCTCAGTGCATGCAGACCTGTGTCAGTTGTGTCTATTAGCTAAGTGCTTCAAACCTGCAGTCCCGTTCCTGGAGTTGGACATGATGGATATTTGCAAGGAGAACGGAGCGTACGATGCAAAGCACTTTCTATGTTATTATTACTATGGTGGCATGATCTACACGGGTCTGAAGAACTTTGAAAGGGCGCTGTATTTTTTTGAACAGGCAATAACCACTCCAGCAATGGCTGTCAGTCACATCATGTTAGAAGCATATAAGAAATACATCCTGGTGTCCCTCATCCTTCATGGCAAAGTTCAGCAGCTTCCCAAATACACGTCACAGATCGTGGGCAGATTCATTAAGaaattaattaattttaaacatcatttagaaaatattgtaaaaactcaaaacataaattcatatAGAAAtttatattttccaaaacaactgacCACTGAGTTAAGGGATCAGAAAATATacatctgtaaacatgttttgtactttaattatgagaaaaatttaaaaacactgacagagaattttttgagtatttctaaaAATGATGTGGAAAAtgttgtgtgtttgtgtgtgtTCCAGCATCTGAGGTGTTTTTCTCTGTCTCAGATCGAGGATGGAGAGATCTATGCAAGCATCAACCAGAAGGACGGCATGGTCTGTTTCCATGACAACCCGGAGAAATACAACAACCCAGCGATGCTCCACAAAATTGACCAAGAGATGCTGAAATGTATAGAGCTGGATGAAAAACTAAAGTCCATGGATCAAGAAATCACTGTAAACCCCCAGTTTGTGCAAAAGAGTATGGGAACACAAGAAGACGATGTCGGCAGCAAGACGTCGAGCTACTCTTGA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0008180 COP9 signalosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-7660 Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS3 (COP9 signalosome subunit 3).

Ensembl:

ensembl_id ENSDART00000018752

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010864 lncRNA upstream 248952 1187493 ~ 1206195 (+) True XLOC_004438
TCONS_00010863 lncRNA upstream 376967 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00010862 lncRNA upstream 551495 902588 ~ 903652 (+) True XLOC_004434
TCONS_00010860 lncRNA upstream 559504 892178 ~ 895643 (+) False XLOC_004433
TCONS_00010715 lncRNA downstream 498758 1966673 ~ 2004160 (+) True XLOC_004444
TCONS_00010716 lncRNA downstream 1110105 2578020 ~ 2607032 (+) False XLOC_004450
TCONS_00008921 lncRNA downstream 1110105 2578020 ~ 2607032 (+) True XLOC_004450
TCONS_00010865 lncRNA downstream 1301650 2769565 ~ 2772390 (+) False XLOC_004456
TCONS_00010866 lncRNA downstream 1301674 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00008907 mRNA upstream 55138 1398404 ~ 1400009 (+) True XLOC_004440
TCONS_00008906 mRNA upstream 66703 1385192 ~ 1388444 (+) True XLOC_004439
TCONS_00008905 mRNA upstream 68465 1286642 ~ 1386682 (+) False XLOC_004439
TCONS_00008904 mRNA upstream 213582 1139690 ~ 1241565 (+) False XLOC_004438
TCONS_00008903 mRNA upstream 322464 1087263 ~ 1132683 (+) True XLOC_004437
TCONS_00008909 mRNA downstream 1175 1469090 ~ 1524187 (+) False XLOC_004442
TCONS_00008910 mRNA downstream 1412 1469327 ~ 1526043 (+) False XLOC_004442
TCONS_00008911 mRNA downstream 24726 1492641 ~ 1526051 (+) True XLOC_004442
TCONS_00008913 mRNA downstream 124231 1592146 ~ 1741781 (+) False XLOC_004443
TCONS_00008912 mRNA downstream 124231 1592146 ~ 1741781 (+) False XLOC_004443
TCONS_00008894 other upstream 933325 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 3029449 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 3583647 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 3584528 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 3589306 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 3593652 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_05159134_05162486.mRNA True 2677 mRNA 0.38 7 CI01000047 5157205 ~ 5162595 (+)