RNA id: TCONS_00010862


Basic Information

Item Value
RNA id TCONS_00010862
length 772
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_004434
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 902588 ~ 903652 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaatgtttttaaaaaattaataactgcttttattttagctgaaataaaacaaataagactttctccagaagaaaaaatattatcagacatactgtgaaaatttccttgctctgttaaaaataatttgggaaatataaaaaaaaaataaaataaaatcaaaagggagctaataattctgacttcaactgtaccctGAGAATCGATTCTGAACATTTGGGAATCCAGAATGGTTAGAGAATGAATGACTATGCAGCAGTTTTCCTCCCTTCTCATTAAGCCCCTACTGAGTAGTGTTCAGCAGTGTGATCATTAGTGAGACGGACCCATCCTGAAGTCGATGTATCCCTCTCCTCCGCTCATCACCAGCACAGATTTGACCAGTTCTGGTGTCGGAGACTCTGAGGATTTATCAGCAATCGCCTCCACTCCTGATCCTGATGCAGACGGAATCACCTGACCTGGCACTGCGGTGAAGAACTTGACGGCGTCTCGGTGTCCGTGAAAGCACAGCTGAGCGTGAGCCATGGAGCAGAAAGGCACAAACGTTCCTGTCGTGACTTTATCGCCGCTCTCGTCTCCGTACACACGGATTGCAGTGCCGGGTTGTTTGGACGATGCTGCTGTATCTTTACTCTCTGTTGccggaataaaaaaaaatgacatcagACTTATTAGCAGAGCTGGTGGATTACTTACAAAATGTGACACGATTACAAATTACTGGTAGTAAtcggactacttttggattacatttagattacttgtgTTCATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010860 lncRNA upstream 6945 892178 ~ 895643 (+) False XLOC_004433
TCONS_00010861 lncRNA upstream 6945 892180 ~ 895643 (+) True XLOC_004433
TCONS_00008899 lncRNA upstream 119716 780999 ~ 782872 (+) True XLOC_004431
TCONS_00010714 lncRNA upstream 359578 542709 ~ 543010 (+) True XLOC_004429
TCONS_00010859 lncRNA upstream 443293 410327 ~ 459295 (+) True XLOC_004426
TCONS_00010863 lncRNA downstream 170751 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00010864 lncRNA downstream 283841 1187493 ~ 1206195 (+) True XLOC_004438
TCONS_00010715 lncRNA downstream 1063021 1966673 ~ 2004160 (+) True XLOC_004444
TCONS_00010716 lncRNA downstream 1674368 2578020 ~ 2607032 (+) False XLOC_004450
TCONS_00008921 lncRNA downstream 1674368 2578020 ~ 2607032 (+) True XLOC_004450
TCONS_00008900 mRNA upstream 94145 804314 ~ 808443 (+) True XLOC_004432
TCONS_00008897 mRNA upstream 115780 695619 ~ 786808 (+) False XLOC_004431
TCONS_00008898 mRNA upstream 123041 763051 ~ 779547 (+) False XLOC_004431
TCONS_00008896 mRNA upstream 262643 638435 ~ 639945 (+) True XLOC_004430
TCONS_00008895 mRNA upstream 362377 532019 ~ 540211 (+) True XLOC_004428
TCONS_00008901 mRNA downstream 96671 1000323 ~ 1010416 (+) False XLOC_004435
TCONS_00008902 mRNA downstream 96874 1000526 ~ 1006626 (+) True XLOC_004435
TCONS_00008903 mRNA downstream 183611 1087263 ~ 1132683 (+) True XLOC_004437
TCONS_00008904 mRNA downstream 236038 1139690 ~ 1241565 (+) False XLOC_004438
TCONS_00008905 mRNA downstream 382990 1286642 ~ 1386682 (+) False XLOC_004439
TCONS_00008894 other upstream 380766 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 3593712 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 4147910 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 4148791 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 4153569 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 4157915 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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