RNA id: TCONS_00008898


Basic Information

Item Value
RNA id TCONS_00008898
length 898
RNA type mRNA
GC content 0.56
exon number 5
gene id XLOC_004431
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 695619 ~ 786808 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGAAACACCGACCGAGAAGAAGGAGCCGAAGGTGGAGAAACTGATCCAGGCGGAGACCACCGAGACGGGCAGAgtgaagCTGCAGGTGTATTGGGAGTATGTGAAGGCGATCGGGCCTCTGCTGGCGCTCTTCATCTGTTTTCTGTACGGCTGTCAGAGCGCCGCCGCCATCGGGGCAAACTTCTGGCTCAGCGAGTGGACGAACGACGCGCTGCACAACCGAACACAGGAGATGCTGCAGACTAGAGTGGGGGTGTACGCTGCGCTGGGCATCtcacaagGTGTGCTGATCCTCTCCATCTGTCTGCTGTGTCGGGCGTACAGCACACTGCGGGCGGCGCGACACACACACCAGCACATGCTGAATTCTGTCCTGAGGGCTCCGCAGGCCTTCTTCGAGGCCACCCCCTCGGGACGCGTCCTCAACCGCTTCAGCAAGGACGTGGACACTATAGACTCGCTCATTCCAGACAATATCGATATCTGGATGCGCACTTTCTGGTACACAGTGAATGTGCTGATGGTTTGCTCTGTCCTCACCCCAATCTTCCTCATAGTCATAGTGCCGTTAATGCTGTTCTATTGGTGGGTCCAGAGGTTTTATGTAGCCACATCTCGTCAGTTGAAGAGACTGGAGTCTGTCAGTCGCTCTCCAATATACTCTCATTTCTCTGAGTCCATCACCGGCACCAGCGTGATCCGAGCTTACGGACGGAACGCCGCGTTCGTGCTCATGAGCGATAATAAAGTGGACGAAAACCAGAAGAGCTACTACCCTGGTATTGTCTCCAACAGATGGCTGGGCGTCCGCATTGAGTTTATCGGGAACTGTATTGTGTTGTTCGCTGCTCTGTTCGCCGTCACAGGAAAAGACAAACTCAGCCCCGGGTTGGTGGG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
ko02010 ABC transporters
ko04976 Bile secretion
ko01523 Antifolate resistance
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050517-16 Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human ABCC3 (ATP binding cassette subfamily C member 3).

Ensembl:

ensembl_id ENSDART00000152579

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010714 lncRNA upstream 220041 542709 ~ 543010 (+) True XLOC_004429
TCONS_00010859 lncRNA upstream 303756 410327 ~ 459295 (+) True XLOC_004426
TCONS_00008890 lncRNA upstream 306536 410038 ~ 456515 (+) False XLOC_004426
TCONS_00010858 lncRNA upstream 474490 287433 ~ 288561 (+) True XLOC_004422
TCONS_00010857 lncRNA upstream 481786 280141 ~ 281265 (+) True XLOC_004421
TCONS_00008899 lncRNA downstream 1452 780999 ~ 782872 (+) True XLOC_004431
TCONS_00010860 lncRNA downstream 112631 892178 ~ 895643 (+) False XLOC_004433
TCONS_00010861 lncRNA downstream 112633 892180 ~ 895643 (+) True XLOC_004433
TCONS_00010862 lncRNA downstream 123041 902588 ~ 903652 (+) True XLOC_004434
TCONS_00010863 lncRNA downstream 294856 1074403 ~ 1078180 (+) True XLOC_004436
TCONS_00008896 mRNA upstream 123106 638435 ~ 639945 (+) True XLOC_004430
TCONS_00008895 mRNA upstream 222840 532019 ~ 540211 (+) True XLOC_004428
TCONS_00008891 mRNA upstream 235025 465701 ~ 528026 (+) False XLOC_004427
TCONS_00008900 mRNA downstream 24767 804314 ~ 808443 (+) True XLOC_004432
TCONS_00008901 mRNA downstream 220776 1000323 ~ 1010416 (+) False XLOC_004435
TCONS_00008902 mRNA downstream 220979 1000526 ~ 1006626 (+) True XLOC_004435
TCONS_00008903 mRNA downstream 307716 1087263 ~ 1132683 (+) True XLOC_004437
TCONS_00008904 mRNA downstream 360143 1139690 ~ 1241565 (+) False XLOC_004438
TCONS_00008894 other upstream 241229 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 3717817 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 4272015 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 4272896 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 4277674 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 4282020 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00013084 True 5208 mRNA 0.47 30 CM030125.1 20406557 ~ 20445394 (-)