XLOC_004435 (si:ch1073-272o11.3)


Basic Information

Item Value
gene id XLOC_004435
gene name si:ch1073-272o11.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1000323 ~ 1010416 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008901
GCAGTAACCAGGCGCGTTCATACGTCATTCCTCCTGCGCGCGGCCGATGACACAAGAACACGCACTCAGTTCTAACTGATTACAGTAGGCTGCGAGTTAATGAAATCAGTCTGAACATTAAAAACAAGCGCAGATCCTTTACATTTGCGGAGAAAACATCGACTTAATTTTACAAACAAAACTATAAGCTCGACTGTGTAAAGATGCTCACAGACATGATAGAAGGAGAGTTTGATATGAAAGAAGAGGAACCGTGGTATGACCAGCAGGATCTGGAACACGatcttcatttggcGGCTGAATTGGGTAAAAATTTACTGGAGCAAAACAGAGAATTAGAAGAAACAATCCAGCAGATGTACATCACCAACCAGGAGCAGATGCAGGAGATAGAGTATCTGTCCAAGCAGGTGGATCTGCTGCGGTCGGTCAGTGATCAACATGCTAAACTCTACGAGCAGCTGGACGCCAGTTCACAAGAGCTGGAGCTGAAAAACCAGAAGCTGACGCAGGAGAACCGAGCAGCGCAGATAAAGATCCAAGGACTCACAGAAACAGTGGACGGTCTGCAGACGCACGTGGAGGAGCTCCAGACTGACCTGCAGAAGATGAAGCAGATTGCTGAAGAACACAAACTCTGCAGATCCCTCAGAGATGATCAGAGGGGGAAATGTGCTTCACgcagGAGCTGCGTCTCTCAGGAGTCCTGGGTCTGCAGCCGGCGGTGCTCTGAGCCGCAGGAGCAGAGGGAGGAGCTTCAGCGCTCTTTGCACTCCCTCCAGGCTCAGCTGAGGTCTGAATGCGCTCTCAGAGAGTCTGCAGAGCTGCAGGTGGAGGACCTGATGCTGCAGATCCGCCTACTGGAGCCCAGAGCCGCATTGGTGGAGGAATACGAGGAACGGCTGCAGGAAGTGCAGGCTGAAGCCCAGGAGCTGCGGCTGcactccagcacacacacaccctcactgGAGGAGGGCGGGGCCTGGCAGAAGGGGTGGAGTCTGCATCAGGACATGTCTCTGCTGGATAATGAAGTGGGTGTGGTCGAACTGAGGGGGCGGAGACTACCAATACTAGATGATGAAGTGGGTGTGCTTGCGCAGATTGATGATGAAGTGGGTGTGGTCGGACAGAGGGGGTGGAGCCTGCCAATGCCGGATGATGAAGTGGGTGTGGTTAAGCAGAAGGGGCGGAGACTGCACAAAGACATGTCTATGTTGGATTATGAAGTGGGTGTGGTCCAACAGAAGGGGCGGAGTCTAAAGCATCAGGCCTTGTCTCTATTGGCTGATGAAGTAGGCGTGATGGGTCAGAACCTGCAACAGAGTTGGTGTTTATTGGATGAAGAAGTGGATGTGGTGGGTCAGAGTGGGCGGAACCTGCAGCATCAAGGCGGATCTCTGTTGAATGATGGAGTGGGCGTGGTCACCCAGAGTGGAGGTGGTCTTTATCAGGGTGTGTATCTGGATGAATGGGATGTGGTAGGCCATAGTGGGCGGAGCCTGCAGCATCAGGCAGCATCTATTCAAGATGATGAAGTGCGTGTAGTCAGCCCGAGTGGGCGGGGCTTGCATAATGGAATGCCTCTGCTGGATGATGGAGTGGGTGTGGTCAAACACAGGGGGCGTGGCCTGCAGCATCAGGGCGCGTCTCTGCTGAGTGAGGTGGATGCGCAGTACGTCGCCCTGCAGGAGAAGTACGATGCGCTGCTGCGCCGCTGCCAGAGCGACACGCCGACACACAACCAGAACACTgttccaacacacacacactccacacacaACCAGCAGCCCGAGTACAAAGCCCTGTTTCAGGAGATTTTCACCTTCATTCAGAAGAGCAAGGAGGACCTGAAGGAGAACAGGACCAAGCCCGATCAGGCTGACTGTAAATAAGCACAAAAAAAAGTGGGGCAGAAGATTTTCCACTCAGGTATTACTGGTATTGGCAGTAAATGTTAGTTTCATAGAAACAGCAGGCAAAGCACACAAtggaaaacacaattttaaaggaAACAGAcatgctttttattatttattttaattttatttaataatttgagaCTTTATTACAGACTTTAAGGTACTTTaaggcactggtgggaggtgtgcgttggcttGAAGCCGCTTCCCAAGTGCCTTAGTGTA
>TCONS_00008902
ATGCTCACAGACATGATAGAAGGAGAGTTTGATATGAAAGAAGAGGAACCGTGGTATGACCAGCAGGATCTGGAACACGatcttcatttggcGGCTGAATTGGGTAAAAATTTACTGGAGCAAAACAGAGAATTAGAAGAAACAATCCAGCAGATGTACATCACCAACCAGGAGCAGATGCAGGAGATAGAGTATCTGTCCAAGCAGGTGGATCTGCTGCGGTCGGTCAGTGATCAACATGCTAAACTCTACGAGCAGCTGGACGCCAGTTCACAAGAGCTGGAGCTGAAAAACCAGAAGCTGACGCAGGAGAACCGAGCAGCGCAGATAAAGATCCAAGGACTCACAGAAACAGTGGACGGTCTGCAGACGCACGTGGAGGAGCTCCAGACTGACCTGCAGAAGATGAAGCAGATTGCTGAAGAACACAAACTCTGCAGATCCCTCAGAGATGATCAGAGGGGGAAATGTGCTTCACgcaggtgtgtgtgtttaaaccTCTCTGTGTTTAGACCTGCAGCAGGTCAAGTACATACTGTTTTATAG

Function

GO: NA

KEGG: NA

ZFIN:

id description

Ensembl:

ensembl_id ENSDARG00000037359

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008901 False 2147 mRNA 0.51 5 1000323 1010416
TCONS_00008902 True 546 mRNA 0.48 4 1000526 1006626

Neighbor

gene id symbol gene type direction distance location
XLOC_004434 NA coding upstream 96671 902588 ~ 903652 (+)
XLOC_004433 NA coding upstream 104680 892178 ~ 895643 (+)
XLOC_004432 wfikkn2b coding upstream 191880 804314 ~ 808443 (+)
XLOC_004431 abcc3 coding upstream 213515 695619 ~ 786808 (+)
XLOC_004430 si:ch211-176g6.1 coding upstream 360378 638435 ~ 639945 (+)
XLOC_004436 NA coding downstream 63987 1074403 ~ 1078180 (+)
XLOC_004437 lmf1 coding downstream 76847 1087263 ~ 1132683 (+)
XLOC_004438 RAB26 coding downstream 129274 1139690 ~ 1241565 (+)
XLOC_004439 pemt coding downstream 276226 1286642 ~ 1388444 (+)
XLOC_004440 rasd1 coding downstream 387988 1398404 ~ 1400009 (+)
XLOC_004429 NA non-coding upstream 457313 542709 ~ 543010 (+)
XLOC_004426 CT737227.1 non-coding upstream 541028 410038 ~ 459295 (+)
XLOC_004422 NA non-coding upstream 711762 287433 ~ 288561 (+)
XLOC_004444 NA non-coding downstream 956257 1966673 ~ 2004160 (+)
XLOC_004450 NA non-coding downstream 1567604 2578020 ~ 2607032 (+)
XLOC_004456 NA non-coding downstream 1759149 2769565 ~ 2772390 (+)
XLOC_004469 NA non-coding downstream 2975663 3986079 ~ 3991423 (+)

Expression


Co-expression Network