XLOC_004431 (abcc3)


Basic Information

Item Value
gene id XLOC_004431
gene name abcc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 695619 ~ 786808 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008897
ATGGAGCACCTCTGCGGCCCCGACAAACCCTTCTGGGAACTGAACCTGACGCTGTACGGGCAGCAGCCGGATCTGCCAGAATGTTTCCAGATGTCAGTTTTATCGTGGGCTCCGTGTATTTACCTGTGGGCCGCAGCTCCTCTCTATATACTACACCTGAGGAGGAACAACCGCGGATACATCATGATGTCCATTCTCAACAGAATCAAGACGgttctGGGCCTGATTCTGTGGATCGTCTGCTGGACGGATCTGTTTTCGGCGTTTCACCAGATGAATCAGGGTTCTAAAATTTCTCCCATATATTTCGTCACTCCTTTAATAGTTGGCATGACAATGcttTTAGCCACTTTCCTGATCCAGTTTGAGCGTCTGAAAGGAGTGCAGTCGTCCGGTGTGCTCTTTATTTTCTGGACACTTTCTGTTGTTTTCGCCATTGTGCCGTTTCGCTCCAAAatcatgcatgcaaacacagagGTCAAAGACAAGCTGAGGTTCACCACGTTCTACATTTACTTCAGTTTTACCCTGCTTGAACTCATCCTGTCCTGCTTCAATGAAAAGCCTCCTCTATTCTCCAGCGCCGTCATGGACcctaacgTGTGTCCAGAAACCACCGCTGGATTCCTCTCCAGAATGACGTTTTGGTGGTTCACCAGAATGGCCATCAAAGGCTACAAATCGCCGCTGGAGAATAAAGACCTGTGGTCCCTGAACAAGAATGACAGTTCAGAGCTGGTGGTTCCCGGTCTTCTCAATCAGTGGGAGGTGGAGAAATCCAAAGCTCACAGCAGCGATGATCAGAACGTCAAAGAGCAGGTCACGTTTACCAAACCCGGCTCAGGAGCTGAAAGCAACCATGTGAATGAGAGTCCTGAGGAGGCGGAGGTTCTGCTGTCCAAACAGCAGCAGAAGTCCCGGCAGCCTTCATTTCTGTGGGCCCTGCTGAGAGCCTTCGGGCCCTACTTCCTCATCGGCTCTGCTTTCAAACTCCTGCAGGATCTCATTACCTTCATCAACCCTCAGCTGCTCAGGATGTTGATAGCGTTCACCAAGCAGTCGGACGTCCCGTCGTGGTGGGGTTACGCTCTGGCGTTTCTGATGTTCGGCACGTCTCTCCTGCAGACGCTCATTCTGCATCAACACTTTCAGTACTGCTTCGTCACGGGCATGAGGCTGCGCACAGGCATCATCGGAGCCATTTACAGGAAGGCTCTGGTGATCACGAATGAGGCCAAGCGCTCCTCTACCGTGGGTGAGGTGGTCAATCTGATGTCTGTAGACGCGCAGCGCTTCATGGATCTCACCACCTTCCTCAACATGCTGTGGTCGGCGCCGCTGCAGATCTTCCTGGCGCTCTTCTTCCTCTGGCAGAATCTGGGTCCGTCTGTTCTGGCCGGTGTGGCTGTGATGGTGCTGCTGATCCCCTTCAATGCTTTCATCGCCATGAAGACCAGAACATACCAGGTGGAGCAGATGAAATATAAAGACGACCGCATTAAACTGATGAACGAGATCCTGAATGGCATCAAGGTGTTGAAGCTGTACGCCTGGGAGCCGTCCTTCAGGGATAAAATCCTGCAGATCCGGCAGAAGGAGCTGCACGTTTTGAGGAAAACTGCGTATCTCAGTGCTCTGTCCACCATGGCCTGGACCAGCGCTCCATTCCTGGTGGCGTTGACCTCATTCGCAGTGTTCGTGAATGTGGATGAGAAGAACGTGCTGGATGCAGAAAAGGCCTTTGTGTCGCTGTCTCTGTTCAACATCCTGAGGTTTCCATTAAACATGCTTCCTCAGGTCATCAGCAGCATCGTACAGGCCAGCGTGTCTCTGAAACGCCTGCAGGATTTCCTGAATCACGATGAGCTGGATCCTGAAAGTGTCGACAGGAAGAGCAACACAACAGAATACGCTGTGTCTGTCGTCAATGGGAAATTCTCATGGGCCAAACGTGATCAAGTCATTCTGGACAATATTAACGTGCTGGTGCCGCAGGGCTCTCTGCTGGCTGTGGTTGGTCATGTGGGCTGTGGGAAAACCTCCCTGATATCTGCTCTGCTGGGGGAGATGGAGAAGCTGGATGGGCAGATCTCCATACGGGGCTCTGTGGCTTATGTTCCTCAGCAGGCCTGGATCCAGAACGCCACACTGAGAGACAACATACTGTTCGGCCGGCCGTATGTGGAGCAGAAATACCGCTGCGTGCTTGAGGCCTGCGCCCTAACCCCTGACCTGGAAGTGCTTCCTGGAGGAGACCTGACTGAGATCGGGGAGAAGggcatTAATCTGTCTGGTGGTCAGCGTCAGCGTGTGAGTTTGGCCAGAGCTCTGTACAGTGAAGCAGACGTGTATCTGCTGGATGATCCTCTGTCTGCTGTCGACGCTCATGTGGCGAAACACATCTTTGATCATGTCATCGGTCCTGAAGGAGCGCTCAAGGGAAAGACGCGGATCCTGGTAACTCACGGCATCAGCTTCCTGCCGCAGGTCAACAACATCCTGGTCCTGGTGGACGGACGCGTGTCGGAGATGGGCTCCTATCAGGATCTGCTGAGACAGAACGGAGCGTTCGCAGAATTCCTGAGAAACTACTCTCTCGAAGACATCATTGAAGACGACGAACTCACAGTGTCATTTGATGAGGAAGAAGAGGAGTTTCCTGAAGACGCTCTCAGCAATCACACAGATATGGTGGATAATGAGCCTGTAGTGAATGAGGCCCGCAGACAGTTCATGAGgcAGATGAGCATCATGTCTAATGATGTGGAGAACCCTAAGAAGATGTCTCGCCGGCGCCGCTGTAGCGAGAGGAAACATCCGGAAACACCGACCGAGAAGAAGGAGCCGAAGGTGGAGAAACTGATCCAGGCGGAGACCACCGAGACGGGCAGAgtgaagCTGCAGGTGTATTGGGAGTATGTGAAGGCGATCGGGCCTCTGCTGGCGCTCTTCATCTGTTTTCTGTACGGCTGTCAGAGCGCCGCCGCCATCGGGGCAAACTTCTGGCTCAGCGAGTGGACGAACGACGCGCTGCACAACCGAACACAGGAGATGCTGCAGACTAGAGTGGGGGTGTACGCTGCGCTGGGCATCtcacaagGCATCCTGGTCATGTTTTCCTCCTTTACTCTGGCTCTGGGAAAGATCCAGGCGGCCAGAAAGCTGCACCAGGTTCTGCTGGAGAACAAGTTCCAGACGCCGCAGAGTTTCTTTGACACGACTCCCACAGGCCGCATCATCAACCGCTTCTCCAAGGACATCTACGTGGTGGACGAGGTGCTGCCCTCCACCCTGCTCATGTTCCTGGGCACCTTCTTTGCGTCTCTCTCCACCATGATCGTTATCATTTCCAGCACTCCGGTGTTCGCGTTTGTCATTGCCCCGCTGGCCCTCATTTACTTCTTTGTGCAGAGGTTTTATGTAGCCACATCTCGTCAGTTGAAGAGACTGGAGTCTGTCAGTCGCTCTCCAATATACTCTCATTTCTCTGAGTCCATCACCGGCACCAGCGTGATCCGAGCTTACGGACGGAACGCCGCGTTCGTGCTCATGAGCGATAATAAAGTGGACGAAAACCAGAAGAGCTACTACCCTGGTATTGTCTCCAACAGATGGCTGGGCGTCCGCATTGAGTTTATCGGGAACTGTATTGTGTTGTTCGCTGCTCTGTTCGCCGTCACAGGAAAAGACAAACTCAGCCCCGGGTTGGTGGGTCTGTCAGTATCGTACGCCctgcagGTCACAATGTCGCTGAACTGGATGGTGCGGATGACCTCTGACCTCGAGAGCAACATCGTAGCGgtggagagagtgaaggagtatTCAGAGACACAGACGGAGGCTCCATGGGAGGTGCTGGAGAAGAAGCCTCCTCCAGACTGGCCTCCGCTGGGGAACGTGGAGTTTGTGGATTACAGCGTCAGATATCGAGAAGGTCTGGATCTGGTGCTGAAGAACATCTCTCTGAAGGTCCGCGGAGGAGAAAAGaTCGGCATTGTGGGCCGCACGGGCGCCGGGAAGTCCTCCATGACTCTGTGTCTGTTTCGGCTCCTGGAAGCGGCGGCTGGAGAAATCGTCATCGATGATGTGAAGATTTCAGAGATCGGCCTGCATGACCTGCGCTCCAAACTCACCATCATCCCTCAGgagccAGTTCTGTTCTCCGGGACGCTGCGCATGAATCTGGACCCCTTTGAGAGGTACAGTGATGAAGAAGTGTGGAAAGCTCTGGAGCTCTCGCATCTGCAGAAGTTCGTCACCAATCAGGCTGCCAAACTGGAGCTGGAGTGCTCAGAAGGAGGAGAAAACCTCAGtgtgggTCAGAGGCAGCTGGTGTGTTTGGCTCGTGCTCTGCTCAGGAAGACTCGTATCCTGGTTCTGGATGAAGCGACGGCTGCAGTGGATCTGGAGACGGATGATCTGATCCAGAGCACCATCCGTACAGAGTTCCAGGACTGCACTGTGTTCACCATCGCACACAGACTCAACACCATCATGGACTACaccagAGTGCTGGTTCTGGATAAGGGACAGATCGCAGAGTTCGACACTCCCACTAACCTGATGAATCAGAAAGGCCTGTTTTTCGGCATGGCCAAAGACGCGGGACTGGCCTGAGAACAGCCGGAGCGGAGCCGCAGTGCCTTCACAATCACTCAGAGCCAGTCTGTGATTATacaccagtgttggggaaagctACATttcaaagtaatgcattactacaTTGAGTTAGTCCACAAACAAGTCACTAGTTGTGTTACTTACATTACTTGGTTAaatttatggtaagtaatgcattacaatggtgtaatgcattatattaatattgagttactctccaAAACAAGTTACTAGTTGCGTCAGTTATTGTTTATGAAAAGTAATGCAtttcaatattgagttactcccccaaaagtAACTAATTGGattacttaattactttttatggaaattgatgtgttacaatattgagttactccccaaacaagttactagttgcattacttagttactttttatagaaagtaatgCGTTTCAATAATGAGTTACTTTTCAAggaaagtaactagttacattaCTTGTAACTACATTATGTTACATTTATGGTAAGTAATgagttacaatattgag
>TCONS_00008898
CGGAAACACCGACCGAGAAGAAGGAGCCGAAGGTGGAGAAACTGATCCAGGCGGAGACCACCGAGACGGGCAGAgtgaagCTGCAGGTGTATTGGGAGTATGTGAAGGCGATCGGGCCTCTGCTGGCGCTCTTCATCTGTTTTCTGTACGGCTGTCAGAGCGCCGCCGCCATCGGGGCAAACTTCTGGCTCAGCGAGTGGACGAACGACGCGCTGCACAACCGAACACAGGAGATGCTGCAGACTAGAGTGGGGGTGTACGCTGCGCTGGGCATCtcacaagGTGTGCTGATCCTCTCCATCTGTCTGCTGTGTCGGGCGTACAGCACACTGCGGGCGGCGCGACACACACACCAGCACATGCTGAATTCTGTCCTGAGGGCTCCGCAGGCCTTCTTCGAGGCCACCCCCTCGGGACGCGTCCTCAACCGCTTCAGCAAGGACGTGGACACTATAGACTCGCTCATTCCAGACAATATCGATATCTGGATGCGCACTTTCTGGTACACAGTGAATGTGCTGATGGTTTGCTCTGTCCTCACCCCAATCTTCCTCATAGTCATAGTGCCGTTAATGCTGTTCTATTGGTGGGTCCAGAGGTTTTATGTAGCCACATCTCGTCAGTTGAAGAGACTGGAGTCTGTCAGTCGCTCTCCAATATACTCTCATTTCTCTGAGTCCATCACCGGCACCAGCGTGATCCGAGCTTACGGACGGAACGCCGCGTTCGTGCTCATGAGCGATAATAAAGTGGACGAAAACCAGAAGAGCTACTACCCTGGTATTGTCTCCAACAGATGGCTGGGCGTCCGCATTGAGTTTATCGGGAACTGTATTGTGTTGTTCGCTGCTCTGTTCGCCGTCACAGGAAAAGACAAACTCAGCCCCGGGTTGGTGGG
>TCONS_00008899
gacagccccgccctaaataactgagAGCCCCCCCTgaataactgatagccccaccctaaatgactgatagccccaccctaaataactgatagcccaaccctaaataactgatagccccaccctaaatggctgatagccccaccctaaataactgatagccccaccctaaataactgatagcccaaCCCTAAATGGCTGATTGCTCCACACTAAATGactagtatataaatatatgtaaatacactactatatacatataaaatgagAAGACTGTAccgcatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgcagaTCGGCATTGTGGGCCGCACGGGCGCCGGGAAGTCCTCCATGACTCTGTGTCTGTTTCGGCTCCTGGAAGCGGCGGCTGGAGAAATCGTCATCGATGATGTGAAGATTTCAGAGATCGGCCTGCATGACCTGCGCTCCAAACTCACCATCATCCCTCAGgagccAGTTCTGTTCTCCGGGACGCTGCGCATGAATCTGGACCCCTTTGAGAGGTACAGTGATGAAGAAGTGTGGAAAGCTCTGGAGCTCTCGCATCTGCAGAAGTTCGTCACCAATCAGGCTGCCAAACTGGAGCTGGAGTGCTCA

Function

symbol description
abcc3 Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human ABCC3 (ATP binding cassette subfamily C member 3).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
ko02010 ABC transporters
ko04976 Bile secretion
ko01523 Antifolate resistance
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050517-16 Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human ABCC3 (ATP binding cassette subfamily C member 3).

Ensembl:

ensembl_id ENSDARG00000096662

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008897 False 5130 mRNA 0.51 31 695619 786808
TCONS_00008898 False 898 mRNA 0.56 5 763051 779547
TCONS_00008899 True 633 lncRNA 0.50 2 780999 782872

Neighbor

gene id symbol gene type direction distance location
XLOC_004430 si:ch211-176g6.1 coding upstream 55674 638435 ~ 639945 (+)
XLOC_004429 NA coding upstream 152609 542709 ~ 543010 (+)
XLOC_004428 si:dkey-94l16.4 coding upstream 155408 532019 ~ 540211 (+)
XLOC_004427 mprip coding upstream 167593 465701 ~ 528026 (+)
XLOC_004426 CT737227.1 coding upstream 236324 410038 ~ 459295 (+)
XLOC_004432 wfikkn2b coding downstream 17506 804314 ~ 808443 (+)
XLOC_004433 NA coding downstream 105370 892178 ~ 895643 (+)
XLOC_004434 NA coding downstream 115780 902588 ~ 903652 (+)
XLOC_004435 si:ch1073-272o11.3 coding downstream 213515 1000323 ~ 1010416 (+)
XLOC_004436 NA coding downstream 287595 1074403 ~ 1078180 (+)
XLOC_004422 NA non-coding upstream 407058 287433 ~ 288561 (+)
XLOC_004421 NA non-coding upstream 414354 280141 ~ 281265 (+)
XLOC_004419 NA non-coding upstream 627839 65644 ~ 67780 (+)
XLOC_004444 NA non-coding downstream 1179865 1966673 ~ 2004160 (+)
XLOC_004450 NA non-coding downstream 1791212 2578020 ~ 2607032 (+)

Expression


Co-expression Network