XLOC_004428 (si:dkey-94l16.4)


Basic Information

Item Value
gene id XLOC_004428
gene name si:dkey-94l16.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 532019 ~ 540211 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008895
CTTCGTTCTCCCGGTATCCGCTATGGTTCCGCTCGCTAACAGAGTTCCGTTCGGCGCAATGGAGCGACTCTGAACCTGAACGCGTCGGCCCGCTGATATGGAGGAGGCTCCCAGCAGCTCGGACGCTCTCCAGCCTCAGGATCTGTCCTCCGCCTGCAGTCTGCCTGACATTGAGTGTTTATTAAAAGCCAATCCCATCGACGCTCTGCGTGTGGTCCCGACGCCAGCCTGGATCCTCGGTCCCGGGACCAGCAATGGGATTCTGCTTTCAGAGAGCGACTCCGAGCCGACGATTCCCGCAGGTCAGATCCAGCCGGACGAAGCGTTCTCCAACACCACTGTCACGCTGTCCTACGTCAGCCGCTCGCACCTCTTTTCAGAGCATTCCCCAGTGTACGGCGTTCCTTCGGCGTTTCTCCGAGCGTACGATGCAGGGAAGCTGGCAGCGGATGCTGGGGATGTGGACTGTGTCCAGCAGGTCTCCGTACCACTCGGATTAACAACCTGCGAACAGTTGGGATTCCTGACGCCAGAGCAGGTCGTGGAAAACATGGCAGCGCTGTGCTACCTTCAGCAGCCAGATGTGGAAAACCTTGCATTGGAAACGCTCAAGTCTTTACAAGCGAATCCAGGCGAGTGCAGATTTCCCATCAGCGTGGACGAACTCCAGAACGGAGCTGCGAATGGGCTCTGGAGTGTGAATCCATTCCAAGGAGGATTTCCAGAGGAAAACGGCGGCGATGTTGAAGGATTGCATCCGAACGTTAATCCAGAGCTTGTGCTTTTGATCTCCAGATCTGAGGAGCCGCTCATCCTACCCAATGAAGCCACGAGCTTCGCTTTATCGTTAAACCCAGAGTTTGTAAGTCCGTTAGATTCTGCGTTACCTTCCGAAGAGCAAACGCAAGATGATAGTGCACAAAATGCAACTCCCCCTAGTGGACTAATGAATGATGCAATGCAAAAAGAAGCGATCGAAGTCATGAACTCATCATCATGTGTCAAACTAACCAAGCAAACCGAGAACGACGCATCAGATGCGTTCAAAACAAGTGATGACTTGGTCATTAAAACTAAGAAGATTCCAGAGAGGAAGACGCTGCCGCCGAGAGCTGGACGAGGCATGAGGCTCGAAGCCATCGTTCAAAACATGCAACTCTTCAGATGCAAATCAACTCGTGTGGTAAAACCTCGAGGAACAAACAAACCATCGAGGGTAAAAACACACAACAGTGTGTTGGCTGAAAAGACAGAAGTGCAGCATGTACACACCGAGCCAACAGAAGTCAGACGCTCGAGCAGACGCAAAGCCACGATATCTACCTCAACTCCTGTAAAGACGTTTTTAAAATGCACAAAGAATGAGTCGACGAACAGAAACTGTAGTTCGTTAACAAGCAACCAAGGGAATCAAGCAGTGCACAAACATAACGTTTCAATAAAGAAATCCGTCAAACGCAAAAATAAGAAATGCAAAAGCACACCCTTCTTCTCTGCGCAGGAACCTGAAATAAATCTCAAATGTCTCAAGCTGAAGAAGAAGGAGGTGCGGGATGATTCGTTTGCGCCGTATGTTCGCGTGCAGTTTTCGAATTGTACGATTGTCAACTATCCCAATGAGAAACGAGGGAAGAGTAAGACGTCTGCAGGTTTTTTGTCCGGGATAACGCCCGCGACTCCTGGATTTCAACATGGACGGGTTAGCATGGACGGCGAACATCAGGATTTGTTGGTTTGTTGTCTCTGCGGGAGCTCATCTAATGCGATGGATCTCGGAGATCTGCATGGGCCGTATTATGCGGAAGGCTTCAAACCAGCCTCCAAAGTTGCTTCTAATCATCAAGAGGACGAGAATAGTGACTCAGACTCGTCTTTTAGAGGAAAAACCGCTGCTGAGGGAAACTGGACAGACTCTCTGGATTGGAGATGGAGCGGAGttggcgagccagccaggagagtCAGGACAGACTCCCCTATTGATTGGTACAGTCCGCCGGTGGTTCCTCTGCACGAAACAGAGCACTGGTTTCATGAGGACTGCGCCATTTGGTCTGCAGGGGTGTTTCTGGTTCGGGGAAAACTGTATGGGCTGGAAAATGCTGTCAAGTTGGCAAAAGTGTCGGTTTGTTCCACTTGTCAGAGAACAGGAGCGACGCTGGGCTGTGTTTATAAAGGCTGTCTGAACAAATACCACTACACCTGTGCAGTACAGTCAGgCTGTGTATTAAATGAGGATAATTACTCAATGAAATGCAGAAAGCACAAGAACTCCTCATATCATCAGATCAACAGGTGACAGCAGACGGAGAGCAGCACGGCAGATGCTGAGAGCGTGTTCAGACTTCAGTGATTCAGTCTGGAGCTTCACATTCGGAAAGCCTTAAAGACCTCACTGCTGCAGGAGATTCACACTGTATCCGAAATCGCCCACTATACCCTCGTTCACTGTTCCCTACACTGTCAAAAGCATCTCTTCATCAGCAGtttcagtgtttgtttgtgttgctgaactgcattatgggatgttgatctctgctctgtccac

Function

symbol description
si:dkey-94l16.4 Predicted to enable metal ion binding activity. Predicted to be involved in circadian regulation of gene expression and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-291 Predicted to enable metal ion binding activity. Predicted to be involved in circadian regulation of gene expression and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000090142

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008895 True 2545 mRNA 0.50 6 532019 540211

Neighbor

gene id symbol gene type direction distance location
XLOC_004427 mprip coding upstream 3993 465701 ~ 528026 (+)
XLOC_004426 CT737227.1 coding upstream 72724 410038 ~ 459295 (+)
XLOC_004425 gsg1l2b coding upstream 123943 387850 ~ 408076 (+)
XLOC_004423 CABZ01058222.1 coding upstream 201817 292452 ~ 330202 (+)
XLOC_004424 rcvrnb coding upstream 212627 316238 ~ 319392 (+)
XLOC_004429 NA coding downstream 2498 542709 ~ 543010 (+)
XLOC_004430 si:ch211-176g6.1 coding downstream 98224 638435 ~ 639945 (+)
XLOC_004431 abcc3 coding downstream 155408 695619 ~ 786808 (+)
XLOC_004432 wfikkn2b coding downstream 264103 804314 ~ 808443 (+)
XLOC_004433 NA coding downstream 351967 892178 ~ 895643 (+)
XLOC_004422 NA non-coding upstream 243458 287433 ~ 288561 (+)
XLOC_004421 NA non-coding upstream 250754 280141 ~ 281265 (+)
XLOC_004419 NA non-coding upstream 464239 65644 ~ 67780 (+)
XLOC_004434 NA non-coding downstream 362377 902588 ~ 903652 (+)
XLOC_004436 NA non-coding downstream 534192 1074403 ~ 1078180 (+)
XLOC_004444 NA non-coding downstream 1426462 1966673 ~ 2004160 (+)

Expression


Co-expression Network