RNA id: TCONS_00010873


Basic Information

Item Value
RNA id TCONS_00010873
length 4024
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_004469
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3986079 ~ 3991423 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGACTGAAACTAATTCCTTGAATCTTCACCTCTGGATTGTCTTTGTTCACTTGACCAAACCTTCTTTTCATCACAGGTTTGCTGACCTCCATTACGTCTTCATGACTCCTCAGCAGTGTTTCTCCAGCAATGACCTTCTGTATCTTTTCATGACCTCCATCAGCTTCACACATTATCTTGAACTCTTCAATACGTGTGTTTTCCGCCTCCATTTCTACTTTTCCATCCATTGTTTCAACTAATACCATAGTTTCTTCTTCCAGTACAAATGCATCAGCTGGCGCTTGTAATTCAGGTTGTTGGTTTTCATCATCCTCATGTTCCTGATCATTCTGGTCAACGTTTTTCTCCTTTTCATCAGTGAAATGGCCATCTGAATGTCTCAAACCTCCTGTGCCTTCTGCCTCCTCAATGTCCATCATCTTTATCTGTTTATATTCCTCTACATATTCTCCATAAAGCTCAGACTGGACCATATCGGTGCTATCTGGATCTTCTTTCTTTATCGGCATCTTACACTTTCCATCATCATCTTTTTGTTCAATTTGCCAATTTTTCTCCAGCTCCTGTGCAGATTCACTGTCTTTAGATTCAATGTTTGCATATTCAATTTTAGATGAAACTTCTCTGTCTTTAACAAGTGCATCATCATCTTTGACTTCATCTATGTCTGAATCATCTTGATTAGTCGCTAAATAATCAGTTCCAGTTGATAACTCTGCACAATGATGAGTTTGTTGCTCGTGATGTCTCTCAGCTTCAGTTGTTTCAAGCTTTGGTGAACTAGTATCTTGCTCATTTTGCTTGAAATCTTCACTGGAGGTTTCCACCTCCATTTGAACATTACTTTCCATTGTTTCCTCTGAAACCATCCTATCTTCTTCCAGTACAAATGCATCAGCTGACACACTGTTTGCTGTTCCTTGACATTCTGCATCACCAAGTTCCTCCACTGAAAGCTCTACCGAATGTTCAGTCTTTTTCAGCATTTCGGTTTCTATCATCTCCTTCAACACTTGATTTGTTATTTCCTCAACATAATCTAAAGCAGTCTTCATCAGGATCTCCTGCTCCTCAATAAATCTCTCTGATTCCCTTGCGAGACTTTCCTTTACAAACTCTGATGGGGGTAAAGATCTTCTTAATATGGAGTCAACATCTGCAACCTGTTCTACCTCGGCAGATCCATCTGAATGTCCTAGTGATTCTGATAAAGTGTCCACCATCGTATCTTGAGATGATTTACATTCTCCTCTTGCAAACTCAAGACGCTCACGTGACTCTAAAGTGATTTTTGTCTCAAAGCTTTCTGCCTTTTCATGTTCTGACATCAGCTTGGTACTTAATTCAACATCTTCCAtaagtgacaacttgtgacaaatTTCCTGACTTTCAGCTGCACCCAAGGATTCGATTAGAGTTTCGATGTCTTTTTCAACCTCAACAGCTTCCTCGGTTGGTTTCAGTGTCTCTGAACGCCCAGCAGTGCATGCAAACTCAACATCTCTTTCTAAATGCCTTTCTGAAACAGACTGGAGATCATTTAGGTAGGTTTTGCTCTCCTCAAAATGCACTGTTGATGAAATCTCTTTCCTCAATTCTCCTGGGAACTTGCAAACAATCACATCTGAAAACATGCCTTCAGTGTTTACAGCAACGACTGGCGATCCAGTTCCTGTTTCTGTAGTATTTTCTGGAGTATCCTGTTTTGAATCTAACAGCATGGTGTCTTCGGATGTATTAACAGTTTCAAAACACTCAACCAATACTGTGGTCATTTTCGGTTCCAATTCATTGTTTGGTTCATGTGTTTTAGGCACTTCATTGGAAATTTTATGCAACGTTTCTGTTGACTGCAATTCAGAAGTTATGGTGTTTTGTTCACGCTCTGTCACGTCTTCATCCTTCTCAGATGCAAGCAACACATCTCCTACTGCATTTTCAGCACTTTCAGAACAATATGTTTCCATTAAGTTCTGCTTTTCAGCATTTGAAAGTGTGTCCTCGATGGAATATTTAAACTGAGGAAGCACATCTTCTGATTGTGATTTAAGTGCTGTTTCTTCATCCTTCTCGTTTTCCCCCTGATCATTCATCTCAAATATTTTTGTCCCCTTTTGATCCATAACATGTTCCCCTGCTTCTGTAATATCTTCTGTCTCTTCAGGGTCCCtcttttctgtctgttttttaAAATCAGATTGGACAGTTATCGATGTGTAGCCTAGATCTTCTTTCTTCATCATACATTTTTCATCCTCATGACGCTGATCATCTTGTTCAGTTTTCCCAGTTAGCTTTATCTCATGTGACGTTTCACAATCTTTATCCTTCTCAGTTGCACTCCTACTTCCAAAATCAACCTGATCAGCCTCATTTTTAAAGAATTCATCAAAGTCATCAGAATAAGTGTCCAATAAATTCAGCTTTTCAGCCACAGAAAGGCCACCAGTACGGTATTCCAGAAGTGGAGGCAAATCTTGCACCTTTTCTTCATCATTCTCAATCATTTCATCATCAGCAAACTCTACCTCATTTGTATCTGCATGTTGTAAACCTCCAATGACTTCATTCTCGCCGTGGTCCGGTTTTTCAACATGCTTCTGAAGCTCAGATTGGACCAGTATATCTGCAAGATCTAATTCATCTTTCATCACAGACTTTTCATCCTGATTATTCCAGTCACATTCTTTGTTTTTACTATCTTCTTCTTTAGTTTTCCCAGTTTGCGTTATCTTGTGTGATGTTTCGCTATCTTCCTGCTCAGTTGCACCCTCGGTTCCAGGTCCCTGATCAAGCTCATTTTTACAGAATTCATAAACTTCATCAGAATATGTGTCCAATAAATTCAGGGTTTCAGGCTTTGAAAGCCCATCTGCTTCCCTTCTGGAATACCGTAAAGCAGGAGGCAAATCTTGCACCTTTTCTTCATCATTCTTAATTGTTTCCTCGATATTTTGATGAACAAATTCTACCTCATTTGTATCTGCATGTTTTAAACCTCCAATGACTTCATGCTCTCCATGGTCTGGTTTTTCATCTACATCTTGTTCCTGAAGCTCAGATTGGACCAGTATATCTGCATCATATAATTCATCTTTCATCACACATTTTTCATTCTGATTTTTCCAGTCACATTCGTTATTTTTAGCATCTTCTTCTTTAGTTTTCCCAGTTTGCTTTATCTTATGTGATGTTTCGCTATCTTCCTGCTCAGTTGCACCCTCGGTACCAGGTCTCTGATCAAGCTCATTTTTAGATAATTTATAAACTTTATCAGAATATGTGTCTAATAAATTCAGTGTTTCAAGCTTTGAAAGTTCATCTGCTTCCTTTTTACTGTATTCCAGAAGTGGAGGCAAATCTTGCACCCTTTCTTCATCATTCTTAATCGTTTCCTCATTATTTTGGTGAACAAACTCTACCTCATTTGTTTCTGTATGTTTTAAACCTCCAACGACTTCATTCTCTCCATGTCCTAGCTTTTCATCTTGTTCCTGAAGCTCAGATTGGACCAGTATATCTGCATGATCTAATTCGTCCTTAGTCACACCCTTTTCAACCTGATCACATTCTTTGTTTTTAGCATCTTCTTGTTCAGTTTGCCCAATTTCCTCCAACCCATGTGTTGCGTCACTCTCTTTACGCTCAGAATTTGCTGTTTCTTTTTTAGCATGAGCATCACCAGACATACTCCCAGTCCCAGTTGACCACTTTGCAAAACGGTACGTTTGTGTTTTAGGGACGTCAATGTTAAGTTCATCATTACTGTCATCCTTGACCACACCAGTATTTTCCCACTGGACTTGCGCTCTGACATCAGGTGAAGAACCCTTGATCTCTGCTGTATTTTTGTCATGTTGGCTCTCACTACTTTCTGCCTTCACTTCTTTGTCAGTTTTATTAACTGCAGCCTCATCTGATCTAGAATTAACGCTTTGGTTTCCTTTATCTGTGACTTCCGGTCTGAGGTATCTCGCAACAGCCCCTGACAGATAACCCTATATGAGCAAAACAATGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010870 lncRNA upstream 966635 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008935 lncRNA upstream 977269 3003970 ~ 3008922 (+) True XLOC_004459
TCONS_00010866 lncRNA upstream 1213801 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00010717 lncRNA downstream 101029 4092452 ~ 4093573 (+) True XLOC_004471
TCONS_00010718 lncRNA downstream 112365 4103788 ~ 4106410 (+) True XLOC_004472
TCONS_00010876 lncRNA downstream 417236 4408659 ~ 4450452 (+) True XLOC_004478
TCONS_00010877 lncRNA downstream 436700 4428123 ~ 4473148 (+) True XLOC_004479
TCONS_00010878 lncRNA downstream 737594 4729017 ~ 4734988 (+) True XLOC_004483
TCONS_00008949 mRNA upstream 63121 3912544 ~ 3923070 (+) True XLOC_004468
TCONS_00008948 mRNA upstream 76453 3875901 ~ 3909738 (+) True XLOC_004467
TCONS_00008947 mRNA upstream 95975 3871452 ~ 3890216 (+) False XLOC_004467
TCONS_00008945 mRNA upstream 124432 3848109 ~ 3861759 (+) False XLOC_004466
TCONS_00008950 mRNA downstream 44986 4036409 ~ 4044132 (+) True XLOC_004470
TCONS_00008951 mRNA downstream 122978 4114401 ~ 4145033 (+) False XLOC_004473
TCONS_00008952 mRNA downstream 125093 4116516 ~ 4143661 (+) True XLOC_004473
TCONS_00008953 mRNA downstream 156291 4147714 ~ 4157240 (+) False XLOC_004474
TCONS_00008954 mRNA downstream 157689 4149112 ~ 4157153 (+) True XLOC_004474
TCONS_00008894 other upstream 3464369 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 505941 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 1060139 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 1061020 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 1065798 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 1070144 5061567 ~ 5061697 (+) True XLOC_004495