RNA id: TCONS_00008947


Basic Information

Item Value
RNA id TCONS_00008947
length 1549
RNA type mRNA
GC content 0.48
exon number 7
gene id XLOC_004467
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3871452 ~ 3909738 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agaagaagaagaagaagaagactgaCAGCCGCTGCTTTCATTAGCTCGTGGAAGCGACATATTCACTTTTCTCTCCCTCATGTTGGCCCGATGTGGGCAATTGTCTGGAAAACTTCTCCGATTGAGCAGAATCAACTTTAGCATCTCCAAAACCAGGACATTTATCTCTAGTCTTTCTTCTTGTCATTTTTCATCCCCACGTTCTGTTTTCACTTCTTTTTTTGCATATTCAGCTCTCCCACGTTTCTCTCTCCATCACTCTCATCTCTCAGCATCCTGTTATCCTGCACTGAGCTCTGACAGAACGATCCGTTTTCTCTCTGCATCCACTCGTCCTGCCGAACACATGGATTTAAAGGGAGTTCTGGAGGTTTTGGAACAGCTCGCTCCATTATCATTGGCTGAATCCTGGGATAATGTTGGCCTATTGGTGGAACCTAGTAGACCTCGTCCAATCAAAACAATCCTGCTCACTAATGACCTGACGGCGGCGGTCATGGATGAAGCTGTAGGGATGAAGTGTGATCTGATCGTCTCCTACCATCCGCCACTCTTTCGGCCTTTCAAGCGTTTGCTGCAGAAGGACTGGAAGCAGCGTTTGGCAGTCAGAGCAATCGAAAACGGCATTGGCATTTTCTCCCCACACACTTCATGGGACAGTGTTGAGGGAGGCGTTAATGACTGGCTTGTTGGAGGAATGGGTAGAGGTAAAGTGTCGGTATTAAGTCAAGCAGTCTCTAGCGGTGCACAGAAACACAGGATTGAGTTCTCATGCATGGATGATGGAGAAGTAAACAGCCTTTTGGAGCAGCTGAGACACACAGAGGGCAGCGAAACCTTTCAGTGCACTAGAATAAAAAGTGAGAGTGGAGGACAGCAGGTGAATCTGACCTGTAGGAGCTCAGCGTTGACTGGTGCGGTGCAGATTCTGCTTTCACATCCACACACCAGCAAATCCCTGAACATCACACAAGTCCAACAGCCTCCTCTGTTGGGCTGTGGTCAGGGTCGACTCAGTGTTCTGGAGGAACCAGTGTCTGTTTCTACAGCAGTGCAGAAGATGAAAACACACTTGGGTTTGCCTCATTTGAGACTGGCCTTGGGGGACCAGCAGACATTAGACTCGATGGTGAAGACGGTTGCAGTGTGTGCCGGTTCTGGAGCTTCTGTCATACAAGGAGTAACAGCAGACCTCTACATCACTGGTGAGATGTCCCATCATGAGGTGCTGGATGCGGTTTCTAAAGGCACCAGCGTGATCCTCAGCGAGCACAGCAACAGCGAGAGAGGCTTTCTGGGTGTTTTCAGAGAGAGACTAAGCGCTCGACTGGACCACACGGTTAGCATAGTGATCTCTCAGACTGACCGAGATCCACTACAGGTGGTCTGATCTCACTCTCACAGCCGTTTACTGTGTAATTCAGCCATACTGGACTGCATATATGCATATCACAAAGAATATTCAATGTGTGACCTGGAGTTTGTAAGTGCGACAGTAACATTGTCCTATAAACAAGTGAAATAAACCATATcatctagcttttttttt

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050706-80 Predicted to be located in nucleus. Predicted to be active in mitochondrion. Orthologous to human NIF3L1 (NGG1 interacting factor 3 like 1).

Ensembl:

ensembl_id ENSDART00000066546

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010870 lncRNA upstream 851896 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008935 lncRNA upstream 862530 3003970 ~ 3008922 (+) True XLOC_004459
TCONS_00010866 lncRNA upstream 1099062 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00010871 lncRNA downstream 95863 3986079 ~ 3991423 (+) False XLOC_004469
TCONS_00010872 lncRNA downstream 95878 3986094 ~ 3991423 (+) False XLOC_004469
TCONS_00010873 lncRNA downstream 95975 3986191 ~ 3991423 (+) False XLOC_004469
TCONS_00010874 lncRNA downstream 95987 3986203 ~ 3991423 (+) False XLOC_004469
TCONS_00010875 lncRNA downstream 95992 3986208 ~ 3991423 (+) True XLOC_004469
TCONS_00008945 mRNA upstream 9693 3848109 ~ 3861759 (+) False XLOC_004466
TCONS_00008946 mRNA upstream 10218 3848114 ~ 3861234 (+) True XLOC_004466
TCONS_00008942 mRNA upstream 139438 3723650 ~ 3732014 (+) False XLOC_004465
TCONS_00008943 mRNA upstream 139474 3723651 ~ 3731978 (+) False XLOC_004465
TCONS_00008944 mRNA upstream 139474 3723677 ~ 3731978 (+) True XLOC_004465
TCONS_00008949 mRNA downstream 22328 3912544 ~ 3923070 (+) True XLOC_004468
TCONS_00008950 mRNA downstream 146193 4036409 ~ 4044132 (+) True XLOC_004470
TCONS_00008951 mRNA downstream 224185 4114401 ~ 4145033 (+) False XLOC_004473
TCONS_00008952 mRNA downstream 226300 4116516 ~ 4143661 (+) True XLOC_004473
TCONS_00008953 mRNA downstream 257498 4147714 ~ 4157240 (+) False XLOC_004474
TCONS_00008894 other upstream 3349630 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 607148 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 1161346 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 1162227 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 1167005 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 1171351 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_04128025_04134725.mRNA True 1196 mRNA 0.46 6 CI01000047 4127902 ~ 4134725 (-)