RNA id: TCONS_00010870


Basic Information

Item Value
RNA id TCONS_00010870
length 2037
lncRNA type sense_over
GC content 0.54
exon number 17
gene id XLOC_004459
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2993523 ~ 3019847 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aTGGAGGACTTCAGGAGGTCGTACCTGCGGCTGTGTAAGGAGGGAGGAGTCGACACTCAGGAATCAGTGCTGGCTCAGCTGCACGACACCAGGACAGTGACAGGCAGCAGTCGGCTGGATCTGAGCGGTCAGAGCATCACTGTGGACACATGCAGCGTGCTGGCCAGAGTCCTGCAGAACGACACCGTCTTCACTGAGATCATCCTCAGCGACTGCATGCTCAGTGAGGAAGGTGTTAAAATGCTACTGAATGGCCTTTGCTCCAACACCACAGTGAAAGTTTTGGATCTGAAGggcAACAATATGAGAGGAACGGGAGCTGAAGCTTTGGGACAGTTATTAGTGAGGAATAAGGTGCTGCGCAGGCTGGTGCTGGAGTGGAATGCTCTGGGAATGTGGGAGGAAGGATTTGCTGTATTTTGTGAAGGTCTGGCCTCCAGCACCTCTCTCACCCAGCTTGACCTGCGCAATAATCAAATCAACCACCAGGGGGCAGCAGAGCTCTGCGTAGCGCTCAAGAGGAACTCAAATCTGCAAGAGCTGGATCTCCGGTGGAACAACATGGGTCTGCTGGGCGGTCGATCTCTGCTGGAGGCGATGCAGCAGAACCGCACACTCACCAAACTGGAGCTGGCTGGAAACAACATTCCCAGTGACACACTCAGAGCCATCGAACAGTCCATGAATCACAACGTCGACAGGCAGTCCACACTTCGAGAGAGCAAAAGCAGGACTCAAGTGCTCAGCAAAGAGATCCAGCTATTAAAGGATGAGAAAAGCCGACAGATGAAGTATCTCAGTCTGATGGAGACCATTGACAGACAGAAAGGCGAGATGGGAAGAAGCAGCAGAAATTCCTCCATACGTCTGGGGCAGTTGCAGGAGGCGCTGAATGAGCAGAAATCATCGGTCAATTCTCTCACAGCCAAgcTGCAGATGACGGAGGCGGCTCTCGCTCTGTCCGAGCAGAAGAACCATGATCTGGCGGATCTGCTGACTCGagtgaaaatggaaaaaaacgaACTCCGAGAACGGCAGTCCAGAGAGATCAAGAAAGAGCACGAGGAGAATGCTGTGAGGGAAGCGAAGCACTTGAAGGAGGTAAACAGTTTGTCAGAGAAGAACCTCCAGCTCAGAAGCAAGCTGGAAGAGACTGAACGCAGATGTAAAACTCAACAGGATCAGATCTTTGAGCTGAAGCAGGAGCTCACAAACACCACCGCTGAACTGAAGCTGAGACTCGCTCAGACCGAAGCATTAGAACGACTAGAAATGGAGAAGAGAAGAGCAAAGCAGGCACTTGAAGACATGGACGGTTTAAGGCAGAAAGAGGTTGACCATCTGACAAGACACCAGGAGGACAGTGAAAGAGCTCTTCAGGAGCGCATCCTCAAGCTGGAGGGACAGCGGATCCAATTAGAAGAGGAGCTGAGCAGAGTGAAGGCGAGTCTCGTGACGGAAAGAGCTCAAGCAGAAGAGGAGCTCGGGAAAGTTCGTTCTCAAGTGCGACTGGAGGAGCAGCAGCATTTGACCAGCCTGGAGGAGAAACTGCGAGCGGTTCGTCAGTCTCGAGACGAGTCACAGAATCACTGCACGCAGCAGAAGCAAACCATCGCAGAGCTGCACGCTAAAGTCAGCCAGCAAAGCATTGAGACGGACTCGCTCCGCCGCAGGATAGACGAGCTCCAGCAGGATCTTGCAGGTAAAGAGCAAGAGAAAGTGTCAGAGGTGACGCGGGTGCGAGTGGAGCTGCAGGAGCAGATCGGACACCTTCAGGCCGAGAGAACGGCACAGGGAGGCCTTAAAGAGAAGATTGCCGCTCTGGAGAGAGAGATAAAGGCGCTCAGTGTCGCCCACAGAGAGGCCCTTTTGGACAAAGAGAGCGAGATGTCGTCTCTGCTGGAGCGCCTGCGCATTCGGGAAGGAGAGATCCAGCGCATACGAGAGGACGAGGCCCAGAGAGCCAGCTTCCTCCAGAACGCCATCCTCACATACGTGCAGGGCTCCCCGCTGGCACACTTCAGCCCTAAGAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010865 lncRNA upstream 223497 2769565 ~ 2772390 (+) False XLOC_004456
TCONS_00010866 lncRNA upstream 223497 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00010867 lncRNA upstream 223497 2769591 ~ 2772390 (+) False XLOC_004456
TCONS_00010868 lncRNA upstream 223497 2769600 ~ 2772390 (+) False XLOC_004456
TCONS_00010869 lncRNA upstream 223497 2769626 ~ 2772390 (+) True XLOC_004456
TCONS_00010871 lncRNA downstream 966523 3986079 ~ 3991423 (+) False XLOC_004469
TCONS_00010872 lncRNA downstream 966538 3986094 ~ 3991423 (+) False XLOC_004469
TCONS_00010873 lncRNA downstream 966635 3986191 ~ 3991423 (+) False XLOC_004469
TCONS_00010874 lncRNA downstream 966647 3986203 ~ 3991423 (+) False XLOC_004469
TCONS_00010875 lncRNA downstream 966652 3986208 ~ 3991423 (+) True XLOC_004469
TCONS_00008929 mRNA upstream 100085 2870671 ~ 2895802 (+) True XLOC_004458
TCONS_00008928 mRNA upstream 147599 2804505 ~ 2848288 (+) True XLOC_004457
TCONS_00008927 mRNA upstream 251241 2677303 ~ 2744646 (+) True XLOC_004455
TCONS_00008926 mRNA upstream 267663 2676878 ~ 2728224 (+) False XLOC_004455
TCONS_00008925 mRNA upstream 325731 2665081 ~ 2670156 (+) True XLOC_004454
TCONS_00008936 mRNA downstream 3326 3022882 ~ 3042029 (+) True XLOC_004460
TCONS_00008937 mRNA downstream 58665 3078221 ~ 3092727 (+) False XLOC_004461
TCONS_00008938 mRNA downstream 58667 3078223 ~ 3093024 (+) True XLOC_004461
TCONS_00008939 mRNA downstream 243008 3262564 ~ 3273072 (+) True XLOC_004462
TCONS_00008940 mRNA downstream 281593 3301149 ~ 3310677 (+) True XLOC_004463
TCONS_00008894 other upstream 2474065 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 1477808 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 2032006 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 2032887 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 2037665 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 2042011 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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