RNA id: TCONS_00008937


Basic Information

Item Value
RNA id TCONS_00008937
length 350
RNA type mRNA
GC content 0.33
exon number 2
gene id XLOC_004461
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3078221 ~ 3093024 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAAAACAAGATGGCAGACAAAAGGAGCTGGGCTTTAGCAATAACAGTCTGTGGAAACATATTTAAGGTTCACTGTtggtttgttgtgtttttaaGGAATACTTTTAACAAAATTCAATCTGAGAGAGTGATTCACTTGAGagaaaaaagaaatgttaaaaCTACTGTATatgctgctgtttttttattgaaacacaaaaggagatattttcaAGAATGTTCATGCAGCTCTTTcctatttaaagggatatttcacccaaaactaaaatcATTAACTCATCCTTGTCACAAGCTTTGAGTtgttttcctctgttgaacacaaaaggagatattttgaaaaatgttggaaa

Function

GO:

id name namespace
GO:0016012 sarcoglycan complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko00052 Galactose metabolism
ko02060 Phosphotransferase system (PTS)
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy
ko05416 Viral myocarditis
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-041111-121 Predicted to enable calcium ion binding activity. Predicted to be located in cytoskeleton and membrane. Predicted to be integral component of membrane. Predicted to be part of sarcoglycan complex. Is expressed in several structures, including adaxial cell; alar plate midbrain region; brain; cardiovascular system; and musculature system. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2D and muscular dystrophy. Orthologous to human SGCA (sarcoglycan alpha).

Ensembl:

ensembl_id ENSDART00000148835

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010870 lncRNA upstream 58665 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008935 lncRNA upstream 69299 3003970 ~ 3008922 (+) True XLOC_004459
TCONS_00010866 lncRNA upstream 305831 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00010871 lncRNA downstream 893352 3986079 ~ 3991423 (+) False XLOC_004469
TCONS_00010872 lncRNA downstream 893367 3986094 ~ 3991423 (+) False XLOC_004469
TCONS_00010873 lncRNA downstream 893464 3986191 ~ 3991423 (+) False XLOC_004469
TCONS_00010874 lncRNA downstream 893476 3986203 ~ 3991423 (+) False XLOC_004469
TCONS_00010875 lncRNA downstream 893481 3986208 ~ 3991423 (+) True XLOC_004469
TCONS_00008936 mRNA upstream 36192 3022882 ~ 3042029 (+) True XLOC_004460
TCONS_00008930 mRNA upstream 58374 2993523 ~ 3019847 (+) False XLOC_004459
TCONS_00008934 mRNA upstream 58665 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008933 mRNA upstream 58665 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008932 mRNA upstream 58665 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008939 mRNA downstream 169837 3262564 ~ 3273072 (+) True XLOC_004462
TCONS_00008940 mRNA downstream 208422 3301149 ~ 3310677 (+) True XLOC_004463
TCONS_00008941 mRNA downstream 479043 3571770 ~ 3574657 (+) True XLOC_004464
TCONS_00008942 mRNA downstream 630923 3723650 ~ 3732014 (+) False XLOC_004465
TCONS_00008943 mRNA downstream 630924 3723651 ~ 3731978 (+) False XLOC_004465
TCONS_00008894 other upstream 2556399 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 1404637 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 1958835 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 1959716 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 1964494 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 1968840 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

//