RNA id: TCONS_00008939


Basic Information

Item Value
RNA id TCONS_00008939
length 3533
RNA type mRNA
GC content 0.38
exon number 4
gene id XLOC_004462
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3262564 ~ 3273072 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATACACTTCCGCCATCCTGAGCTATGGCTGCTGCAACCCGCAAGAAAGCACTGAGATTTTTCTCTCAGTTCGGAGCTTTTATTCTGACCCGGTTCGGCTTCTGGAACTGCTTCGCCATGTTGATGCTGTTCGCGGAGCGCGCCGACGTCAAACGGAAGCCAGACATCCAGGTGCCCTACCTGTACATAGATCTGGGAGCTGCAGTGCTGTGTGCCAGTTTCATGTCGTTTGGTGTGAAGAGAAGATGGTTCGCGCTGGCAGCTGCCATTCATCTGGCCCTCAGCACCTATGTGTCCTATGTGGGAGGGCAAGTCCATTATGGAGACTGGCTGAAGGTACGGATGTACTCCCGAGCAATGGCCATCATCGGAGGCTTTCTGATTCTGTCCAGCGGAGCGGGAGAGGTTTACAGACAGAAACCCCGCACACGCTCACTGCAGTCCACCGGACAGGTCTTCCTGGGCATTTACTTGATATGTATGGTGTACTCGCTGCAGCACAGTAAGGAGGACCGGCTGGCCTATCTGGACCACATTCCCGGAGGAGAGCTGACTGTTCAGCTGCTGGTGCTGGTGTTCGGTGTGCTGGCGCTCGCATACCTGTCTGGATGTTACGTGCGCGTGGCTTCACAGATCCTGGCTGTCCTCTTACCGCTGGTCATCCTCTTCATCGACGGTAACTTCGGTTATTGGCACCGCAGCTGCCGTGTGGAGTTCTGGAACCAGATGAAGCTCATCGGGCAGAACGTGGGCATCTTCGGAGCCGTGCTCATTTTGGCCACCGACAGCTAAACATGCGTGAAAGATCTCCGTACAAGGACAAACGGTGAGCTCGTGCGTGTCTCAGGGGATCATTTTGATGACGTTAATGCTCTGAACATTCAAAGGTGCAGAGGATGCAATTCTCAGCTCGCTTTTTGGAGTATCAGATCGCGAGCGTAAAGTCTTCTGAAGgctgtttacattacattttgtttgctttttttattatgcGTTATTTAAAAGAACGACTACAAGTCTTAATAGTTAAAGTTGAATGctgatttaaaggggtagttcacgcaCAAATGGAAAGTtgctcattatttattcacccacAAGTCGTTTCCAttcattttgagtttatttttttctgttgaacataaaagaagatattttgaagaatgctgaaatcctgtaaccattgacttctgtagtaggaAAAagcaaatgctatggaagtcaatggttgcaactttttttaaaatatcttttcgcatttaacagataaaagaaacacgggtttgaaacaagtaaaagatgACAAAACTgtaatttttgcgtgaactatccctattAAGGGAACAACAATGAGTGTTAATAGGTAAAATAAAGTTGAATGctgatttaaaggggtagttcacgcaCAAATGGAAATTtgctcattatttattcacccacAAGTCGTTTCCAttcattttgagtttatttttttctgttgaacacaaaagaagataatttgaagaatgctaaaatcctgtaaccattgacttctgtagtaggaAAACACTTGCCATGGGAGTCAGTggttgcagctttcttcaaaatatctttttttgttcaGCAGATGAAAGAAACACAAGTTTGAAacatgtaaatgatgacagaagtgtaatttttgggtgaactatccctattaAGGGGACGACGATGAGTCTTACCAGTTAAATTAAAGTTGAatgcttaaaggtatagttcacggAAAAATGGAaatttgcttattatttattcaccctccagTAATTTCCAttcattttgagtttattttgttttctgttgaacacaaaagaagatgatttgaagaatgctgaaatcctgtaaccattgacttctatagtagaaaaaaacaaatactatggaagtcattagttacaggttttcagctttcttcaaaacatcttattttctgttcaacagatgaaagaaacacgggtttgaaacaagtaagtgatgacagaattgttatttttggatgaactatccctatTAAGGAGACGACGGTGAGTCTTAATAGTTGAAGTTGAATGctgatttaaaggggtagttcacacacaaatggaaatttgctcattatttattcaccctcaagtcgTTTCCATTcaatttgagtttattttatttttgttgaacacaaaagaagataatttgaagaatgctgaaatcctgtaaccattgacttctgtagtaggaAAACAcatgctatggaagtcagtggttgcagctttcttcaatatatcctcttttgtgttcaacagataaatgaaacaggtttgaaataagtaaatgatgacagaatttttttttttttgggtgaactatccctattaAGTGGACAACGATGAGTCTTAATAGTTAAATTAAAGTTGAATGctgatttaaaggggtagttcacacacaaatggaaatttgctcattatttattcacccacATGTCGTTTTCAttcattttgagtttatttttttctgttgaacacaaaagaagatattttgaaaaatgctgaaatcctgtaaccattgacttgtaggaaaacaaatactatggaagtcaatggttgcagctttcttcaaaatatcttcttttgtgttcaacagataaaagaaacacaagtttgaaacaagtaaatgatgacagaagtgtaatttttgggtgaactatccctattaAGGGGACGACGATGAGTTTTACCAGTTAAATTAAAGTTGAatgcttaaaggtatagttcacggAAAAATGGAaatttgcttattatttattcaccctcaagtaaTTTCCAttcattttgagtttattttttctgttgaacacaaaagaagataatttgaagaatgctgaaatcctgtaaccattgacttgtataGTAGGAAAACAcatgctatggaagtcagtggttgcagctttcttcaaaatatcctcttttgtgttcaaaagataaatgaaacaggtttgaaacaagtacatgatgacagaattgtaatttttttgtgaactatccctataatgGGGACGACGATGAGCAGCGTTAATAGTTAAATTAAAGTTGAATGCTGATTTAAAAAGGTAGTTCACGTACAAATGGAAATTTGCTCATTATTTATTCGTTTCCATtcaatttgagtttatttttttccgttgaacacaaaagaagataatttgaagaatgctgaaatcctgtaaccattgacttctgtagtaggaaaacaaatactatggaagtcaatggttgcaactttttttaaaatatcttttcgtgtgttcaacagatgaaagaaacccataaagggttgaaacaagtaaatgatgacagaattgtaatttttgggtgaactatccctattaAAGGGAGTTTGTAAAcattatttcatgtttttcagCTATGTTACAGACATTTCTCATGACACTgcatttttttgctgcttgtaatAATTTTGCATTCCTGATACAACTTCTGTAAAAGCGTCACAATGTCAAATAAAATCGTTTTGTATGCAATCTA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-289 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM101 (transmembrane protein 101).

Ensembl:

ensembl_id ENSDART00000184264

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010870 lncRNA upstream 243008 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008935 lncRNA upstream 253642 3003970 ~ 3008922 (+) True XLOC_004459
TCONS_00010866 lncRNA upstream 490174 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00010871 lncRNA downstream 713007 3986079 ~ 3991423 (+) False XLOC_004469
TCONS_00010872 lncRNA downstream 713022 3986094 ~ 3991423 (+) False XLOC_004469
TCONS_00010873 lncRNA downstream 713119 3986191 ~ 3991423 (+) False XLOC_004469
TCONS_00010874 lncRNA downstream 713131 3986203 ~ 3991423 (+) False XLOC_004469
TCONS_00010875 lncRNA downstream 713136 3986208 ~ 3991423 (+) True XLOC_004469
TCONS_00008938 mRNA upstream 169540 3078223 ~ 3093024 (+) True XLOC_004461
TCONS_00008937 mRNA upstream 169837 3078221 ~ 3092727 (+) False XLOC_004461
TCONS_00008936 mRNA upstream 220535 3022882 ~ 3042029 (+) True XLOC_004460
TCONS_00008934 mRNA upstream 243008 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008940 mRNA downstream 28077 3301149 ~ 3310677 (+) True XLOC_004463
TCONS_00008941 mRNA downstream 298698 3571770 ~ 3574657 (+) True XLOC_004464
TCONS_00008942 mRNA downstream 450578 3723650 ~ 3732014 (+) False XLOC_004465
TCONS_00008943 mRNA downstream 450579 3723651 ~ 3731978 (+) False XLOC_004465
TCONS_00008944 mRNA downstream 450605 3723677 ~ 3731978 (+) True XLOC_004465
TCONS_00008894 other upstream 2740742 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 1224292 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 1778490 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 1779371 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 1784149 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 1788495 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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