XLOC_004470 (zgc:123217)


Basic Information

Item Value
gene id XLOC_004470
gene name zgc:123217
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4036409 ~ 4044132 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008950
TTTCACTTCAGCCATGGGGTTGTTAGTGTTCTCGCTTAGCTCTGTAGTCATAATGTTGAGTACGCAGGACTCAAACGCACAGACAACATATGAATGTGGGGTGGCTCCTCTAAATACACGTATTGTGGGTGGCACCGATGCCCCTGCAGGTAGCTGGCCCTGGCAGGTCAGCATACATTACAACAACAGGCACATCTGTGGAGGAACACTGATCCACAGCCAGTGGGTGATGACGGCCGCTCACTGCATCATCAATACTAACATCAACGTCTGGACGCTGTACTTGGGGAGGCAAACCCAGAGCACGTCTGTGGCTAACCCAAATGAAGTCAAAGTTGGCCTTCAGTCCATCATCGTCCATCCAAGCTTCAACAACTCACTTCTCAACAATGACATCTCCTTGATGAAACTGAGTCAACCGGTGAACTTCAGTCAGTATATTCGTCCCATCTGCCTGGCAGCCAATAACAGCATCTTTTACAATGGCACATCCTGCTGGGCCACGGGTTGGGGAAACATCGGCAAAGACCAAGCTTTGCCGGCCCCGCAGACTCTTCAGCAAGTGCAAATCCCAGTTGTGGCCAACTCACTGTGTAGCACCGAGTACGAGTCAGTGAATAACGCCACAATCACACCTCAGATGATTTGTGCGGGGAAAGCGAACAAAGGAACCTGTCAGGGCGATTCTGGAGGTCCATTTCAGTGTAAACAGGGGTCTGTGTGGATCCAGGCGGGCATCACGAGTTATGGGACGAGTGCGGGCTGCGCTGTGGGAGCTTATCCAGACGTGTATTCACGAGTCTCTGAGTTTCAGTCTTGGATCAAGATGAACGTCCAGGGATCTGCCATTGACTTTGTAACTTTTACATCCAATTGCACAGACGCCAACATCACATGCTCAAACACAGCCTCACCGCATTTCACATTCATCTCTAATTTCAGAATTCTCTTCATTACACTAATCTCAAGCTTCCTCATACTCATGGTCACTTAAAACCGACTCTTGCAAACATGCAAATATTAATATACAGACTCAGTatttttccatccacctattttttttgcacatttttgcacatttttaataaattacggataaaacaaaaacacttaatggagcataaattttttaaatgtgcaaaaaaaagtttACCAAAGCAGGATCAACTTTTTATAAgacaaaaatgtgcataaactataatGGAAACACTGAATAATATTCAGCATGCACTTCAAGAAAGTaacaaaaa

Function

symbol description
zgc:123217 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-188 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space.

Ensembl:

ensembl_id ENSDARG00000059026

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008950 True 1250 mRNA 0.45 6 4036409 4044132

Neighbor

gene id symbol gene type direction distance location
XLOC_004469 NA coding upstream 44986 3986079 ~ 3991423 (+)
XLOC_004468 tbx6 coding upstream 113339 3912544 ~ 3923070 (+)
XLOC_004467 nif3l1 coding upstream 126671 3871452 ~ 3909738 (+)
XLOC_004466 cabp5a coding upstream 174650 3848109 ~ 3861759 (+)
XLOC_004465 pagr1 coding upstream 304395 3723650 ~ 3732014 (+)
XLOC_004471 NA coding downstream 48320 4092452 ~ 4093573 (+)
XLOC_004472 NA coding downstream 59656 4103788 ~ 4106410 (+)
XLOC_004473 si:dkey-32n7.4 coding downstream 70269 4114401 ~ 4145033 (+)
XLOC_004474 itgam coding downstream 103582 4147714 ~ 4157240 (+)
XLOC_004475 itgam coding downstream 116672 4160804 ~ 4167750 (+)
XLOC_004456 NA non-coding upstream 1264019 2769565 ~ 2772390 (+)
XLOC_004450 NA non-coding upstream 1429377 2578020 ~ 2607032 (+)
XLOC_004444 NA non-coding upstream 2032249 1966673 ~ 2004160 (+)
XLOC_004436 NA non-coding upstream 2958229 1074403 ~ 1078180 (+)
XLOC_004478 NA non-coding downstream 364527 4408659 ~ 4450452 (+)
XLOC_004479 NA non-coding downstream 383991 4428123 ~ 4473148 (+)
XLOC_004480 CABZ01030103.1 non-coding downstream 453232 4497364 ~ 4497479 (+)

Expression


Co-expression Network