XLOC_004479


Basic Information

Item Value
gene id XLOC_004479
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4428123 ~ 4473148 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010877
TTAAAACATGAATGCTAGAGAGAAGGGACAGATATACCTGTACTCTGTGCCGCTTTGACCAGCCCCTGTCTCAGGACGTCCCGCACCCAGCTCTTGACCACTGACCTCCCCTCGCCGCCCACCACTGACACCACCAGGCTGGGCTGCGGCAGCTTCCAGTGCTCCTTCATCAGGTCAAACACCCTGGCAGGATCTGTGGTGTTGGAGAGACGCAGGAACTGCCAACCAGAGAACAAAAATCACGTCACATGACAAAATACAGCCATTTCCCCAACTATGAGCAATTCTTAAATCCTAAGGGACGATTTTTATTAAag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010877 True 317 lncRNA 0.51 2 4428123 4473148

Neighbor

gene id symbol gene type direction distance location
XLOC_004477 mmp25b coding upstream 149794 4260779 ~ 4278329 (+)
XLOC_004476 mapk7 coding upstream 189296 4220353 ~ 4238827 (+)
XLOC_004475 itgam coding upstream 260373 4160804 ~ 4167750 (+)
XLOC_004474 itgam coding upstream 270883 4147714 ~ 4157240 (+)
XLOC_004473 si:dkey-32n7.4 coding upstream 283090 4114401 ~ 4145033 (+)
XLOC_004480 CABZ01030103.1 coding downstream 24216 4497364 ~ 4497479 (+)
XLOC_004481 si:dkey-94f20.4 coding downstream 100548 4573696 ~ 4576816 (+)
XLOC_004482 kansl1a coding downstream 212997 4686145 ~ 4725660 (+)
XLOC_004483 NA coding downstream 255869 4729017 ~ 4734988 (+)
XLOC_004484 NA coding downstream 275423 4748571 ~ 4751852 (+)
XLOC_004472 NA non-coding upstream 321713 4103788 ~ 4106410 (+)
XLOC_004471 NA non-coding upstream 334550 4092452 ~ 4093573 (+)
XLOC_004469 NA non-coding upstream 436700 3986079 ~ 3991423 (+)
XLOC_004456 NA non-coding upstream 1655733 2769565 ~ 2772390 (+)
XLOC_004450 NA non-coding upstream 1821091 2578020 ~ 2607032 (+)
XLOC_004485 NA non-coding downstream 361701 4834849 ~ 4835314 (+)
XLOC_004492 AL929469.5 non-coding downstream 578414 5051562 ~ 5051697 (+)

Expression


Co-expression Network