XLOC_004482 (kansl1a)


Basic Information

Item Value
gene id XLOC_004482
gene name kansl1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4686145 ~ 4725660 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008962
GCTCAAATCCAAGGGAGACGAACGAGGCGCCATCTTTCGTGCGTTTCTCCCTCCAACGATGAGAAAATGATCTCGAAACCGGTGGTCTGTGGCACCTCCGATCTGTAAATAAAGGCGTTTATGAAAAGAACTCGTACCCGAGCAAAACATCGACTCATAATATactgaaaaaatatacatttgcttTCCACAATCCACAGAAGCGGACAGCAGCAGCAAGGTGTTGTCTAGTATCGCCCATTTCGCGATTCCGGAGCCGATAACGAAAAGGGTTCCTGAAACCGGGGTGTTTTTTGACGAAGCGGACACGGATATGGCGAAGGCGGCGGGGCTGCTTGACCAAACGGCTGGTTTTGTGCTTTGGTGACATTATTGTGCTGTTGAAGCCAAAGGTCGGTGGAATAGTTGCCGAAATTCCCTCGGATCGCGCGCCCGTCACGTGCCAGGCTGTGTAGGTGGGCTGGAGTGAAGGATTAGAGGTGCAGGCTGCCGTGCCCCTTCCCTGGCCCTGCATGGCTGCGATGGCGCCCGCTCTGACTGACGCCCCAGCCGAAGCCCGCCACATCCGCTTCAAACTCGCCTCTCCCTCGTCCACCCTGTCCCCCGGCAGCACAGAGAACAACAGCAACGCCAGCAACATCCTCATCTCAGACTCCGTCTCGGACTCCGCCGGAAGCCACAGCAACGGCAAGTGTCACATCAATTCCAACGACACCCATTACCACAGCGTCAAGGATCAGGATCCCCTGTCTAAAGCCCCATCTCTGGGCAAGCTGGCACCTTACTTGTGCTCTGATGTCAAACCATTGCCCTCATCCACCAAAGTCAAGGAGTCGCTGAAGCTGCAAGGTGTCCTCATTAAGCAGTCAGTGCTAAAGAGCCACGGCCTGTTAAGCGGCTCCATATTTCCAAGCGCTGCTGCAGGCGGAGACTTTCTTCTGCGCAAGCGTCACCATCTTGAGCTGACTGGAGGTCAACTGAAGAGCCTGGTCAACGGTGGCGGAGCTGGGAGTACCATGGTGCCTGTGAACGGACTCTCCAAGAAAGTGGCTGTGCCTAGAGCTGCGGTGGCGGAGAAAGGTAGCGTCGCCACAGTCAATGGAGACAGCAACCAACCATCCACCAACGGGGAAGCTTTGCTATCCGTGTCCTCAAAGTCAAAGTCTGGACAGAATGGAGATGTGAAGCCACAACAGAATTCGACACCGAGCATTCAAGGTGTGTCATCACACAGGGAGCTTACTGCTTTGACTGAAAGTGCAGAGGTCAAAGCAGAACCAGGGACTCCTGTTGGTGGACTGCGCATCGAAACAAACAGCAACAATGATGTCAGCTTTGAAAACTGCCCCTCGTCTCGTAGCTCATCCCCAGTTCAGGATGACTCGACCATACCGACACCCAACTTGGAGGTACTGCTCCGGGATCGGGCCAAGCAGAGCCAACAGAGGCAAACAGACATCGAGAGCCGCCTGCTGCGTCTCCGCAAGCGGCTGCAGGTGGTACAGGCCAAGCAGGTGGAGCGGCATTTCAAACAGCAGCTCTCTGGTTTTCTTGAGCGTACTCTGACCCCAACATCTAGTCGTAGAGGAGACCCTGGAGCCTGGAGAGGGTCACGCACTTCAGTGGAAACGCACGCACATCATTTGAATCGGTTTTTGAAGGGTGGCAGGGTGGCGTCAGAGCTGGATAGTCTGCATCTCAGCGGCACCACACATCTGCATGCAGCAGAGAGTCAGTTTGACTCTGATGCCACCGAGAGCAGTTCAGGAGGAGAGAGCGACGTAGAGGAGGATGAGCTGGCCAGGGTGGACGTCGAACAGTGTCACATTAAACTatGGAGGAGAGCAGAAGGCCGGTTTGCCCGGGAAAGAGCCACCATCATCAGTCACTGGACGTGGCTGCAGGCGCAGATATCAGACCTGGAGTACCGCATCCGGCAGCAGGTCGACATCTACCGCCAGCTCCGCACCGGAAAGGGTCCAGTGGAGCTGGGAGACTCCGCCCCTTCCTGCAAGACAGAGACTAATGAGAATATCCTGACCTCAACAACATCCCAGAATTTCTCTGAATCGCAGTCTCGCTTGACGGACGCATCTGAGAACATTGTCTCCATTAGCAGTGTGTCAGAAATGTCAGACACGTGTCTTTTGAGTCTAGACGGCAGCTCTACGTCTGCACGAACACGTCCGCTGGTGGCCTGCAGGAGGCGACGACTGATCCACCCTAACACCATCCACAACCTCAACGGCAAGGTTCAGAGAGTGTGTTTCTCTCCTCTGCGAGTGTGTGAGGTCAACAGCTCGTGCGTGATGTGTGGCAGCGCTCGATCCCTCCTGAAAGCAGACTCGCCGTATGATCGCCCTCTGCTGGAGAGAGTCGCACATCACGACCGCAGTGTCCACCCCGTTCTGTCCATGCAGTCAGATGTGGCATTCAGCGTACAGTTGCAGAAGGTGTTGAGGACTCACTGGCAGACTCGACCCTTTGACAGGATCAAACCGCTCAAGAAGATCGCCCTCAAACACAAGCTCTCCACCACACCTCCGTCATCATCATCACCGTCTTCATCCTCCTTCCTCTCCAAACACAAATTCAGACTGTCCAACTCGCATGCGGCAGCAGTCCGATTTGCTCGCCACAAGAGCAGGTCGGAAAGGTTTCACAGGCTGCCAGTGGAAAACATCTCATGTGTCCCAAAGCCAGAAACACTCACACCCTGCAGGACGGGCCGAGTGCTGGACCGGAGCCAGAGCCGAAAGAGGGTCCGAGAGCCCTCGCTGGACAGAGCAGACTCACCGAAAGTGGTGATGGATGCAGGCAGTCCATGTCCGTCTCTGTCCGGTCTTCACTCTACCAACACCAGTCCTCTGACCAGACAGCTCTCCCTCCCGATCGAGAGCAGCACTCCTCTGGGAAGCAATGTGCCTATACGGAGAAGAAGAGGCGAGAGTCCGTTTGATATCAACAACATCGTCATTCCCATGTCAGTGGCTGCAACTACCCGAGTGGAGAAACTGCAGTACAAAGAGATCCTCACACCCAGATGGAGGGAAGTGGACACTTTGGCTCAACCGCTTTCAGAGGAAGACAATAACATTCAGGTTGAGGATCTTTCAGACGCAGTGTTCGCTAAACTCCACCAGCTGTGTGAGGATCAGGAACGCTCTCGCTGGAGATGGACAGCTCTCGCACCAGCCAAGAGGAGAGGCAGCAGGTCATATAAATCTCTGGACGGGCGAACAACCCCATCGCTAATCGGAACAAACCCTTCGACGCCGCAGCCCTCCTCTCCAGACACCAGTCAGTTCCAGATCCTGCAGGATTACGGAGCGGTGCCGTCAATGTCGCCCCTGAGCCCTGCCAGCCCTGACACACCACACAGACTGATGTACAGCGAAGACACCTGCGGCTCCACCTCAGACTGCACACTGGAGGAgaagACGGTGCAGCCCTGGGACCTCAGGAGTTTTCCTTTACCTGAAGACCCGATAGTGGAGCCAGAGCCAGAGCAAGATGAGCTGAGCTTTTCTGCAGGCCTCAGAGTCAGCGTGGAGTCCGAGAGCGACGCTTCCTCACCCTGATTAAAGACAGACCACGCGGACGGGCGATCTTAAAACCACACACCTCTTATGGCATTAATTGAGGAAAACACAAACTCATACTAATCAAAGCAAAACTACAAACGAATCTGTCGGGACTTCTGTTGTTTGATATTCAAACATCAGCCaattattttcacagtttttagTGAATATTACCGGACATAGAAAGCTAAAcctgttttctttattttgtttttctctcaGAAGAAACGCGTAAAGGAGATGTATGAAAGTTTTTTCCATAATTGTTTTTCATAGTCAGCTAAATATATCATCGGGAACTTAGTGTGGTATTCTAACCTGTCAGGTGAACACTATGTAGTGCACTGTGTAGCAGACGTAAAGAGGGCTTGACCAAAGGGTGCCTCTCTGCTGACTcgttatatatatgtatgcttgTGTTGTGAAGTGACGAACCAAAACCTGACGAAGATACTTGCCTGCATTATTCTCAGTTAGTGGATGGTCGTACGCCGAGCTCCGTTCAAAAGCACTTCACAGGGCACCGATATCTCTTCCTCGCTTTTCGCTCTTTCTTTCGGTTTTCTTTATGGTTTCCACCAAGCGTATGGAGTATTGCTATGCTAATGTTCATCATGACATCATGTATAATGGAGGAATCGCAAGCCTTTAGTGCACATTAGTTTAGCTGTACGTGCTCCGGGCTCTTTCTGCATCATCTGTTGAGATTGTACTTTTGTATCGTTGGTCTTAAAGGAGCCAGATGTTTCACACAGACCTGCCCTTCTCAGGTTTATGCAGTTGTTTGGGAAGCTGTTAACAAGGCGTCCGTCTGTTTTATCTCCTCACCTTGTCAATATTTGTGTGACCCCGACTTAGTGTTCCTACTCAGCACTGTCTTCGCCCTTCGAGAATCTACTTGCTATGCAACTCGACATTATTGTTGTGGCCCTGTCCTTTTCTTTTTCATACAATCACcatgtctttcttttgttttatttctttgacATGTCTTTCTCTTCATAGCTTTTTGAGACAGGTTTCATTGTAATTCGGACTGTTTCAGACGTGAAAtcatttgcagaaaaaaaaagaaaaagaaaaacaccctTTTTGTAAATAGTACcattaaaacaaatcaaactcCA
>TCONS_00008963
GAAATGTCAGACACGTGTCTTTTGAGTCTAGACGGCAGCTCTACGTCTGCACGAACACGTCCGCTGGTGGCCTGCAGGAGGCGACGACTGATCCACCCTAACACCATCCACAACCTCAACGGCAAGGTTCAGAGAGTGTGTTTCTCTCCTCTGCGAGTGTGTGAGGTCAACAGCTCGTGCGTGATGTGTGGCAGCGCTCGATCCCTCCTGAAAGCAGACTCGCCGTATGATCGCCCTCTGCTGGAGAGAGTCGCACATCACGACCGCAGTGTCCACCCCGTTCTGTCCATGCAGTCAGATGTGGCATTCAGCGTACAGTTGCAGAAGGTGTTGAGGACTCACTGGCAGACTCGACCCTTTGACAGGATCAAACCGCTCAAGAAGATCGCCCTCAAACACAAGCTCTCCACCACACCTCCGTCATCATCATCACCGTCTTCATCCTCCTTCCTCTCCAAACACAAATTCAGACTGTCCAACTCGCATGCGGCAGCAGTCCGATTTGCTCGCCACAAGAGCAGGTCGGAAAGGTTTCACAGGCTGCCAGTGGAAAACATCTCATGTGTCCCAAAGCCAGAAACACTCACACCCTGCAGGACGGGCCGAGTGCTGGACCGGAGCCAGAGCCGAAAGAGGGTCCGAGAGCCCTCGCTGGACAGAGCAGACTtaGCACCGAAAGTGGTGATGGATGCAGGCAGTCCATGTCCGTCTCTGTCCGGTCTTCACTCTACCAACACCAGTCCTCTGACCAGACAGCTCTCCCTCCCGATCGAGAGCAGCACTCCTCTGGGAAGCAATGTGCCTATACGGAGAAGAAGAGGCGAGAGTCCGTTTGATATCAACAACATCGTCATTCCCATGTCAGTGGCTGCAACTACCCGAGTGGAGAAACTGCAGTACAAAGAGATCCTCACACCCAGATGGAGGGAAGTGGACACTTTGGCTCAACCGCTTTCAGAGGAAGACAATAACATTCAGGTTGAGGATCTTTCAGACGCAGTGTTCGCTAAACTCCACCAGCTGTGTGAGGATCAGGAACGCTCTCGCTGGAGATGGACAGCTCTCGCA

Function

symbol description
kansl1a Predicted to enable histone acetyltransferase binding activity. Predicted to be part of NSL complex. Human ortholog(s) of this gene implicated in Koolen de Vries syndrome. Orthologous to human KANSL1 (KAT8 regulatory NSL complex subunit 1).

GO:

id name namespace
GO:0000123 histone acetyltransferase complex cellular_component
GO:0044545 NSL complex cellular_component
GO:0035035 histone acetyltransferase binding molecular_function
GO:0046972 histone acetyltransferase activity (H4-K16 specific) molecular_function
GO:0043995 histone acetyltransferase activity (H4-K5 specific) molecular_function
GO:0043996 histone acetyltransferase activity (H4-K8 specific) molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121219-5 Predicted to enable histone acetyltransferase binding activity. Predicted to be part of NSL complex. Human ortholog(s) of this gene implicated in Koolen de Vries syndrome. Orthologous to human KANSL1 (KAT8 regulatory NSL complex subunit 1).

Ensembl:

ensembl_id ENSDARG00000090895

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008962 False 4711 mRNA 0.52 14 4686145 4725660
TCONS_00008963 True 1068 mRNA 0.55 8 4712215 4721724

Neighbor

gene id symbol gene type direction distance location
XLOC_004481 si:dkey-94f20.4 coding upstream 109329 4573696 ~ 4576816 (+)
XLOC_004480 CABZ01030103.1 coding upstream 188666 4497364 ~ 4497479 (+)
XLOC_004479 NA coding upstream 212997 4428123 ~ 4473148 (+)
XLOC_004478 NA coding upstream 235693 4408659 ~ 4450452 (+)
XLOC_004477 mmp25b coding upstream 407816 4260779 ~ 4278329 (+)
XLOC_004483 NA coding downstream 3357 4729017 ~ 4734988 (+)
XLOC_004484 NA coding downstream 22911 4748571 ~ 4751852 (+)
XLOC_004485 NA coding downstream 109189 4834849 ~ 4835314 (+)
XLOC_004486 ghrhr2 coding downstream 119788 4845448 ~ 4854555 (+)
XLOC_004487 scn4aa coding downstream 143588 4869248 ~ 4893492 (+)
XLOC_004472 NA non-coding upstream 579735 4103788 ~ 4106410 (+)
XLOC_004471 NA non-coding upstream 592572 4092452 ~ 4093573 (+)
XLOC_004492 AL929469.5 non-coding downstream 325902 5051562 ~ 5051697 (+)
XLOC_004493 AL929469.4 non-coding downstream 326783 5052443 ~ 5052578 (+)

Expression


Co-expression Network