XLOC_004484


Basic Information

Item Value
gene id XLOC_004484
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4748571 ~ 4751852 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010879
caacacatctGTACTTCTTTCATTTCACTGTTTCAAAGCTGAGTAATGAAGAGATTCTGGGCTTCTATTGGACAGACTCAGATGTTACCTatccaggctcattgtggatacataccctcgaatacatttctggagagcgccaaatatgtcccaggaggtacctTTTTGCTGTATGTGTTTTGGCAAATCCATCAGaggtcgctgttgactgactgatttcaggtctcaaatttctcttgcaagtgccattcacgcctgcttttttcatttaaatccaccagaggccgctgtcgactgactgactgaccgactaacCTACCGATGGACTGACAGACCAACCCACCcactcacccccttccctaaactctaCCCACAATGtctttaaaagcaatccagaaacatGAAAAGCCCTCAAGGGTGCCtaattttttaccacgttttcaaatcTTACCACATTGTGACCcagtcatttacttgtttattttttgccttttgttttacctgctttctggaacttttCTTTACCGGACTCAAACCTCGTTGTTGCGGTCAACTCTGTTCTTCCTCttaagtctgccgacgtacGTGTTGAGCCGCTGggtaaactggtaacagtggaaaagctgtctacacggaggtaagcggtcagctggtagtgcgTAAAGGGTCAGAAACCGGTTTTGGCATCATACCGCCCAtaacgttcgttttaaagacgaaatgcagccatccATACCTCttgctacataattcacgctctccagaaatgtatacgtgggtacatatccataatgagcccGTGTTGGATGTTACAGACTCTGTCACAGTGGACTCAAAATAAATTACACTTGCATGTCTTTCTGTCGAAATGTGGTTGTTTAcattaaaccagtgtttctcaaccatgttctaGGAGGCCAACCAgctctccttaaccaaacacacctgattcagatgctcagctcattagtagagactgatagacctgtaatgggtgtgaccaACAAAGGCGagatccaaaacatgcagtgttagtggggctccaggaacgtggttgagaaacactgcatttcCCAAATTTGACATTGTGTTGTTTGAATCCAGCATTTAATTTCAACACTCGACAACTGACAAGACCCTCTCCTCAGTTCATTATCAATCCTGAAGTAGCTTATTTTTTTACAAGGTTTCCACAAATGGTCATAACTTCAGGAAGAACCAAGACTGAAGGTGTTGAGTTCAACCTATAGTTACTCACATTGCCACCTCCGGGTGCATGTTTGATATTGTCTTTGGAGCCACACTTTGACTGGACCTTAGTGAAGTCCACCTTCTGATCAAGAATTTTTACCTGAAAGAGTGCAGAGGTCAAGGAAGACAAGAATTATCTTCTGTGGTAAAACCAGAAAGCTTCTGACAGAACCTAGAGAGCTTGTTTTACTATTAACATCAGAGGTCAGTGTTTATAACTTCATGAGGAACATCTGAGGAACATCTGGAGTCAGTTAGGGATGGCTGGGAGTTTGATTAGTCTCCACCTCCAGTCATCAGTAGGGAAAGGAGCAGGCTGTTAAATATTCTTGGTAGGGATTGATGATTAATGGTAATTTTAGGAGTGAACTGGGTCTGGATAACGTTTAGCCTATTGTAACTCACATTGCCAcctccaggtgtgtgtgtgatattgtCTTTGGAGCCACACCTAGAAGGGACATTACTAAAGTCCAACTTCTGATCGAGAATTTGCACCTGTTTAAAGCAAATGTTTGGACATTTtcatgaacaaaaacaaaaacggtAAATGTTCCCTGATTCTCATGAAGTAAAGACAAATTATACACTCAAGGTGCTAAAATACACAAGATTAAATGAGAATGAAAACTGTAcagaaatgctaaaaaaaatgacaaaaacacaggCTCATATGAAATATATGTGCTTTATCCTACATTTTTgtggaaaaaaatcataattaaacatgttttgcctgcagtttctaggtaaaatgaacatTAATGGGCAGTATGACGCTAATAACAtgtgttccttttcacactaataatatttacagGCACTTATCTCGGAATAAAGGTctattttcatgcagttctttggacaacactaaataaataccacaaaaataGTGTCTATGATTTGTATTGAATATACTTATTTCACCTATCTATCTCCAAATGGACAACTTTTCTTGCGCggtcagtttgcttggtagctcactTTGTACAGTGTTGCGTTTGTGATAAAGAGCGCATGGATTTAAGCCCAGTGAAGCATGCTTCCTTAGAAGAGtcaaagcaatgtaaaatcaagttaAAACTACATGGTCGCAGTGTacttttctcttacatttgcttttaaaaacattattggttgggtttaggtcagtggtttgctAAGTGATCTGTACAACAAGCCCTGCCTTCTCTTGGATGTACACAAGAAAGGTGTATATATgtaacgtacaacaaaacgtaccccaaGTAACATGTTTCAGATTcgaaaaaaatgtagacagtgccctctagcggatttgttatctgaaatgtgcaatgtattttacgttttgcaaaaatgtaggttgaggcatttatttacaatgagcctgagctgaaaacacaacacaaaacgaCTAAACATGAGCTAAAACtgaaatacaaaaattaaaactaattaaaataatactaaGACTAAGAAATTGCTAGAATAACACAATGTGATAGCCACTGGTGATAGTTTGGACATCAGAAATAAAGGAATAATATATGTGTTCTGTTGGTTACATTACTCACATTTCCACCTCCTGGTGTATGCTTCAGGTTGGCTTTGGAGCCACACTTTGACTGGACATTGCTGAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010879 True 2875 lncRNA 0.40 2 4748571 4751852

Neighbor

gene id symbol gene type direction distance location
XLOC_004483 NA coding upstream 13583 4729017 ~ 4734988 (+)
XLOC_004482 kansl1a coding upstream 22911 4686145 ~ 4725660 (+)
XLOC_004481 si:dkey-94f20.4 coding upstream 171755 4573696 ~ 4576816 (+)
XLOC_004480 CABZ01030103.1 coding upstream 251092 4497364 ~ 4497479 (+)
XLOC_004479 NA coding upstream 275423 4428123 ~ 4473148 (+)
XLOC_004485 NA coding downstream 82997 4834849 ~ 4835314 (+)
XLOC_004486 ghrhr2 coding downstream 93596 4845448 ~ 4854555 (+)
XLOC_004487 scn4aa coding downstream 117396 4869248 ~ 4893492 (+)
XLOC_004488 cd79b coding downstream 149129 4900981 ~ 4906924 (+)
XLOC_004489 plekhm1 coding downstream 168599 4920451 ~ 4963153 (+)
XLOC_004478 NA non-coding upstream 298119 4408659 ~ 4450452 (+)
XLOC_004472 NA non-coding upstream 642161 4103788 ~ 4106410 (+)
XLOC_004492 AL929469.5 non-coding downstream 299710 5051562 ~ 5051697 (+)
XLOC_004493 AL929469.4 non-coding downstream 300591 5052443 ~ 5052578 (+)
XLOC_004494 AL929469.2 non-coding downstream 305369 5057221 ~ 5057356 (+)
XLOC_004495 AL929469.1 non-coding downstream 309715 5061567 ~ 5061697 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G191581 NA unknown NC_047606.1 CM018552.1 5969743 ~ 5983237 (+)