XLOC_004485


Basic Information

Item Value
gene id XLOC_004485
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4834849 ~ 4835314 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010880
TTTTCAAATACCTCCAGGTCACAGGCTCATTGAGAAGATCCTCAGATTCGTCGTTTTGCGGGGGATTCAATCCACTTTGGCTTGAGTCTTCGTTCCTTAATTTTTCATCCAAACTGTGTTCCGGCCAACATGCATGGCAGTGGAACGTGGATTTTGGCATTGAGTCTTTGTTCGGGTCACCTGAAGACGCTGAAGCGTTGCGATATCGTTTACATTCCTCATATGCATCGTCGACTCTCAATCGCAATCTTTCCACATCTACCGGAGGCTGCTTGGCTTTGAGAGACTCACTGGCTCGTGCCCTGCACGGTAAAAACTTGTCATAGCACAATCAACCGGCGTCGGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010880 True 347 lncRNA 0.48 2 4834849 4835314

Neighbor

gene id symbol gene type direction distance location
XLOC_004484 NA coding upstream 82997 4748571 ~ 4751852 (+)
XLOC_004483 NA coding upstream 99861 4729017 ~ 4734988 (+)
XLOC_004482 kansl1a coding upstream 109189 4686145 ~ 4725660 (+)
XLOC_004481 si:dkey-94f20.4 coding upstream 258033 4573696 ~ 4576816 (+)
XLOC_004480 CABZ01030103.1 coding upstream 337370 4497364 ~ 4497479 (+)
XLOC_004486 ghrhr2 coding downstream 10134 4845448 ~ 4854555 (+)
XLOC_004487 scn4aa coding downstream 33934 4869248 ~ 4893492 (+)
XLOC_004488 cd79b coding downstream 65667 4900981 ~ 4906924 (+)
XLOC_004489 plekhm1 coding downstream 85137 4920451 ~ 4963153 (+)
XLOC_004490 arhgap27 coding downstream 136201 4971515 ~ 5044931 (+)
XLOC_004479 NA non-coding upstream 361701 4428123 ~ 4473148 (+)
XLOC_004478 NA non-coding upstream 384397 4408659 ~ 4450452 (+)
XLOC_004492 AL929469.5 non-coding downstream 216248 5051562 ~ 5051697 (+)
XLOC_004493 AL929469.4 non-coding downstream 217129 5052443 ~ 5052578 (+)
XLOC_004494 AL929469.2 non-coding downstream 221907 5057221 ~ 5057356 (+)
XLOC_004495 AL929469.1 non-coding downstream 226253 5061567 ~ 5061697 (+)
XLOC_004497 AL929469.3 non-coding downstream 254501 5089815 ~ 5089930 (+)

Expression


Co-expression Network