XLOC_004471


Basic Information

Item Value
gene id XLOC_004471
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4092452 ~ 4093573 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010717
ATTGGctatattttgtatgtttatataaGTGTATTTTCATACAAACTACAGGTCCAGACCTATGGTGTCTGTGGTTCCGAAAGTAACCTACAGCAGCTCCACAATCTCCACCAGTGAAACAAACTGCTCAAGGCCTCTGGAAAACACCTTGACTGTGTGCTTCAATATGAGTGGATACAAACACGCTATTACAGATTTGTCTGCAAATATTGAGTATACGTTAAACCTGGATGCCAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010717 True 238 lncRNA 0.40 2 4092452 4093573

Neighbor

gene id symbol gene type direction distance location
XLOC_004470 zgc:123217 coding upstream 48320 4036409 ~ 4044132 (+)
XLOC_004469 NA coding upstream 101029 3986079 ~ 3991423 (+)
XLOC_004468 tbx6 coding upstream 169382 3912544 ~ 3923070 (+)
XLOC_004467 nif3l1 coding upstream 182714 3871452 ~ 3909738 (+)
XLOC_004466 cabp5a coding upstream 230693 3848109 ~ 3861759 (+)
XLOC_004472 NA coding downstream 10215 4103788 ~ 4106410 (+)
XLOC_004473 si:dkey-32n7.4 coding downstream 20828 4114401 ~ 4145033 (+)
XLOC_004474 itgam coding downstream 54141 4147714 ~ 4157240 (+)
XLOC_004475 itgam coding downstream 67231 4160804 ~ 4167750 (+)
XLOC_004476 mapk7 coding downstream 126780 4220353 ~ 4238827 (+)
XLOC_004456 NA non-coding upstream 1320062 2769565 ~ 2772390 (+)
XLOC_004450 NA non-coding upstream 1485420 2578020 ~ 2607032 (+)
XLOC_004444 NA non-coding upstream 2088292 1966673 ~ 2004160 (+)
XLOC_004436 NA non-coding upstream 3014272 1074403 ~ 1078180 (+)
XLOC_004478 NA non-coding downstream 315086 4408659 ~ 4450452 (+)
XLOC_004479 NA non-coding downstream 334550 4428123 ~ 4473148 (+)
XLOC_004480 CABZ01030103.1 non-coding downstream 403791 4497364 ~ 4497479 (+)
XLOC_004483 NA non-coding downstream 635444 4729017 ~ 4734988 (+)

Expression


Co-expression Network